Gene detail information of Glyur000598s00025102.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G80570.3 | 9.00E-179 | RNI-like superfamily protein |
| NR | XP_007150794.1 | 0 | hypothetical protein PHAVU_005G181200g [Phaseolus vulgaris] |
| COG | YP_008955.1 | 3.00E-09 | hypothetical protein pc1956 [Candidatus Protochlamydia amoebophila UWE25] |
| Swissprot | tr|Q3EC97|FBL14_ARATH | 0 | F-box/LRR-repeat protein 14 |
| trEMBL | tr|V7C0A4|V7C0A4_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW22788.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00598 | 123825 | 125228 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000598s00025102.1 | PF13516.1 | LRR_6 | 407 | 428 | 1.5 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.841 |
| SRR1783600 | control | 1.879 |
| SRR1783602 | moderate drought stress | 2.664 |
| SRR1811619 | moderate drought stress | 2.547 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.065 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.006 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 9.171 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 8.719 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.599 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.067 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.338 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.259 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 8.416 |
| SRR2868004 | Drought Stress(Tissue:root) | 8.268 |
| SRR2967015 | Control (Tissue:root) | 8.675 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 2.384 |
| SRR9715740 | Leave | 4.421 |
| SRR9715741 | Leave | 2.838 |
| SRR9715739 | Root | 5.015 |
| SRR9715742 | Root | 3.268 |
| SRR9715743 | Root | 3.084 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 6.638 |
| SRR8749028 | MeJA induced 9h | 6.117 |
| SRR8749029 | MeJA induced 9h | 5.001 |
| SRR8749030 | Uninduced | 2.529 |
| SRR8749031 | Uninduced | 5.996 |
| SRR8749032 | Uninduced | 5.820 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 8.370 |
| SRR8400027 | Control-Root | 7.966 |