Gene detail information of Glyur000600s00022479.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G26440.1 | 0 | Plant invertase/pectin methylesterase inhibitor superfamily |
| NR | XP_003595381.1 | 0 | hypothetical protein MTR_2g044810 [Medicago truncatula] |
| COG | YP_005010945.1 | 2.00E-52 | pectinesterase [Niastella koreensis GR20-10] |
| Swissprot | tr|O48711|PME12_ARATH | 0 | Pectinesterase 12 (Precursor) |
| trEMBL | tr|A2Q3Z8|A2Q3Z8_MEDTR | 0 | Pectinesterase {ECO:0000256|RuleBase:RU000589} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00600 | 1098 | 3619 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | CE8 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000600s00022479.1 | PF04043.10 | PMEI | 45 | 196 | 5.20E-25 |
| Glyur000600s00022479.1 | PF01095.14 | Pectinesterase | 233 | 531 | 4.30E-135 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.619 |
| SRR1783600 | control | 3.552 |
| SRR1783602 | moderate drought stress | 0.621 |
| SRR1811619 | moderate drought stress | 0.692 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.790 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.842 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.378 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.410 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.290 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.346 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 2.389 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.654 |
| SRR2967015 | Control (Tissue:root) | 0.782 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.253 |
| SRR9715740 | Leave | 0.124 |
| SRR9715741 | Leave | 0.429 |
| SRR9715739 | Root | 0.640 |
| SRR9715742 | Root | 0.942 |
| SRR9715743 | Root | 1.029 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.043 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.010 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.018 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 6.233 |
| SRR8400027 | Control-Root | 9.531 |