Gene detail information of Glyur000601s00025448.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G57670.1 | 4.00E-102 | C2H2-type zinc finger family protein |
| NR | XP_003521192.1 | 0 | PREDICTED: protein TRANSPARENT TESTA 1-like [Glycine max] |
| Swissprot | tr|Q9SVY1|ZWIP2_ARATH | 2.00E-137 | Zinc finger protein WIP2 |
| trEMBL | tr|K7KEY8|K7KEY8_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA03G29610.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00601 | 8053 | 11052 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | C2H2 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 12.690 |
| SRR1783600 | control | 12.276 |
| SRR1783602 | moderate drought stress | 8.345 |
| SRR1811619 | moderate drought stress | 8.264 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 8.531 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 8.786 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 25.749 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 25.332 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.613 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.919 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.489 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.624 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 1.808 |
| SRR2868004 | Drought Stress(Tissue:root) | 2.410 |
| SRR2967015 | Control (Tissue:root) | 3.859 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.354 |
| SRR9715740 | Leave | 0.130 |
| SRR9715741 | Leave | 0.238 |
| SRR9715739 | Root | 0.810 |
| SRR9715742 | Root | 4.110 |
| SRR9715743 | Root | 3.713 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.026 |
| SRR8749028 | MeJA induced 9h | 0.103 |
| SRR8749029 | MeJA induced 9h | 0.099 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 10.201 |
| SRR8400027 | Control-Root | 14.388 |