Gene detail information of Glyur000601s00025461.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G49400.10Transducin/WD40 repeat-like superfamily protein
NRAES99150.20transducin/WD40 repeat protein [Medicago truncatula]
COGYP_002463148.15.00E-06NB-ARC domain-containing protein [Chloroflexus aggregans DSM 9485]
trEMBLtr|G7KFW3|G7KFW3_MEDTR0Transducin/WD40 repeat protein {ECO:0000313|EMBL:AES99150.2}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold006017217080412-


Gene family

Gene familysubfamily
Ubiquitin FamilyDWD


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0005515  protein binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000601s00025461.1PF12657.2TFIIIC_delta491826.10E-27
Glyur000601s00025461.1PF00400.27WD401201530.066
Glyur000601s00025461.1PF00400.27WD403123500.00012
Glyur000601s00025461.1PF00400.27WD404234581.60E-05


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control1.157
SRR1783600control1.145
SRR1783602moderate drought stress2.446
SRR1811619moderate drought stress2.397

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain4.212
DRR006520Root Summer glycyrrhizin high producing strain4.155
DRR006521Root Winter glycyrrhizin high producing strain2.980
DRR006522Root Winter glycyrrhizin high producing strain3.135
DRR006523Root Summer glycyrrhizin low producing strain3.117
DRR006524Root Summer glycyrrhizin low producing strain3.065
DRR006525Leaf Summer glycyrrhizin high producing strain2.054
DRR006526Leaf Summer glycyrrhizin high producing strain2.149

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)3.785
SRR2868004Drought Stress(Tissue:root)3.485
SRR2967015Control (Tissue:root)4.061

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave2.426
SRR9715740Leave2.304
SRR9715741Leave2.164
SRR9715739Root1.208
SRR9715742Root2.004
SRR9715743Root1.558

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h5.668
SRR8749028MeJA induced 9h4.428
SRR8749029MeJA induced 9h4.100
SRR8749030Uninduced2.677
SRR8749031Uninduced1.558
SRR8749032Uninduced2.962

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root4.517
SRR8400027Control-Root4.039

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved