Gene detail information of Glyur000601s00025464.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G57800.2 | 3.00E-72 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein |
| NR | XP_004497946.1 | 0 | PREDICTED: transcription factor bHLH60-like isoform X2 [Cicer arietinum] |
| Swissprot | tr|Q3EAI1|BH060_ARATH | 4.00E-81 | Transcription factor bHLH60 |
| trEMBL | tr|V7BKV0|V7BKV0_PHAVU | 2.00E-177 | Uncharacterized protein {ECO:0000313|EMBL:ESW17643.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00601 | 97233 | 102235 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | bHLH |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000601s00025464.1 | PF00010.21 | HLH | 176 | 223 | 2.20E-06 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 7.404 |
| SRR1783600 | control | 7.359 |
| SRR1783602 | moderate drought stress | 7.270 |
| SRR1811619 | moderate drought stress | 7.103 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 7.073 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 6.817 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 5.125 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 5.366 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 11.522 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 10.810 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 16.604 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 16.186 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 6.886 |
| SRR2868004 | Drought Stress(Tissue:root) | 5.685 |
| SRR2967015 | Control (Tissue:root) | 6.891 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 18.839 |
| SRR9715740 | Leave | 23.990 |
| SRR9715741 | Leave | 23.935 |
| SRR9715739 | Root | 3.256 |
| SRR9715742 | Root | 6.722 |
| SRR9715743 | Root | 5.946 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 7.419 |
| SRR8749028 | MeJA induced 9h | 9.019 |
| SRR8749029 | MeJA induced 9h | 11.009 |
| SRR8749030 | Uninduced | 10.826 |
| SRR8749031 | Uninduced | 10.439 |
| SRR8749032 | Uninduced | 14.729 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 10.889 |
| SRR8400027 | Control-Root | 12.891 |