Gene detail information of Glyur000602s00018904.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G13360.13.00E-178ATP-dependent caseinolytic (Clp) protease/crotonase family protein
NRXP_003525261.10PREDICTED: 3-hydroxyisobutyryl-CoA hydrolase-like protein 3, mitochondrial-like isoform 1 [Glycine max]
COGYP_003953927.11.00E-74enoyl-CoA hydratase/isomerase family protein [Stigmatella aurantiaca DW4/3-1]
Swissprottr|Q9T0K7|HIBC6_ARATH03-hydroxyisobutyryl-CoA hydrolase-like protein 3, mitochondrial (Precursor)
trEMBLtr|I1K5T3|I1K5T3_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA05G35260.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold006026961073756+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K05605HIBCH EC:3.1.2.4 Carbon metabolism map01200
Propanoate metabolismmap00640
Valine, leucine and isoleucine degradationmap00280
beta-Alanine metabolismmap00410


Gene Ontology

biological_process

GO:0008152  metabolic process


molecular_function

GO:0003824  catalytic activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000602s00018904.1PF00378.15ECH632574.40E-22
Glyur000602s00018904.1PF13766.1ECH_C2854176.50E-27


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control85.773
SRR1783600control84.926
SRR1783602moderate drought stress96.694
SRR1811619moderate drought stress96.562

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain116.462
DRR006520Root Summer glycyrrhizin high producing strain114.706
DRR006521Root Winter glycyrrhizin high producing strain53.266
DRR006522Root Winter glycyrrhizin high producing strain55.029
DRR006523Root Summer glycyrrhizin low producing strain72.699
DRR006524Root Summer glycyrrhizin low producing strain69.523
DRR006525Leaf Summer glycyrrhizin high producing strain51.330
DRR006526Leaf Summer glycyrrhizin high producing strain50.468

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)99.778
SRR2868004Drought Stress(Tissue:root)97.787
SRR2967015Control (Tissue:root)89.892

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave62.796
SRR9715740Leave71.464
SRR9715741Leave69.205
SRR9715739Root61.094
SRR9715742Root68.370
SRR9715743Root69.311

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h62.580
SRR8749028MeJA induced 9h47.621
SRR8749029MeJA induced 9h54.465
SRR8749030Uninduced38.904
SRR8749031Uninduced20.839
SRR8749032Uninduced37.315

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root89.955
SRR8400027Control-Root86.680

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved