Gene detail information of Glyur000602s00018908.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G12560.2 | 2.00E-25 | F-box and associated interaction domains-containing protein |
| NR | XP_006482561.1 | 5.39E-61 | PREDICTED: F-box/kelch-repeat protein At3g06240-like isoform X1 [Citrus sinensis] |
| Swissprot | tr|Q9SU30|CPR30_ARATH | 6.00E-28 | F-box protein CPR30 |
| trEMBL | tr|V4S9Y8|V4S9Y8_9ROSI | 3.00E-61 | Uncharacterized protein {ECO:0000313|EMBL:ESR44353.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00602 | 88037 | 89197 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000602s00018908.1 | PF12937.2 | F-box-like | 5 | 49 | 1.30E-08 |
| Glyur000602s00018908.1 | PF07734.8 | FBA_1 | 223 | 317 | 1.50E-05 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.688 |
| SRR1783600 | control | 0.787 |
| SRR1783602 | moderate drought stress | 0.750 |
| SRR1811619 | moderate drought stress | 0.804 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.672 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.619 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.207 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.145 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.095 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.786 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.780 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 3.605 |
| SRR2868004 | Drought Stress(Tissue:root) | 4.468 |
| SRR2967015 | Control (Tissue:root) | 4.951 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 2.715 |
| SRR9715740 | Leave | 2.739 |
| SRR9715741 | Leave | 3.803 |
| SRR9715739 | Root | 3.747 |
| SRR9715742 | Root | 2.153 |
| SRR9715743 | Root | 4.128 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.940 |
| SRR8749028 | MeJA induced 9h | 1.871 |
| SRR8749029 | MeJA induced 9h | 0.480 |
| SRR8749030 | Uninduced | 0.198 |
| SRR8749031 | Uninduced | 0.311 |
| SRR8749032 | Uninduced | 0.243 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 3.033 |
| SRR8400027 | Control-Root | 1.608 |