Gene detail information of Glyur000602s00018914.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G49040.10stomatal cytokinesis defective / SCD1 protein (SCD1)
NRXP_004512863.10PREDICTED: uncharacterized protein LOC101507359 isoform X2 [Cicer arietinum]
COGYP_007121393.14.00E-32WD40 repeat-containing protein [Microcoleus sp. PCC 7113]
Swissprottr|Q8RXA7|SCD1_ARATH0DENN domain and WD repeat-containing protein SCD1 {ECO:0000305}
trEMBLtr|I1KQ47|I1KQ47_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA08G04510.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00602116193130147-


Gene family

Gene familysubfamily
Ubiquitin FamilyDWD


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

molecular_function

GO:0005515  protein binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000602s00018914.1PF03456.13uDENN351038.30E-15
Glyur000602s00018914.1PF02141.16DENN1233042.90E-45
Glyur000602s00018914.1PF03455.14dDENN3664331.10E-14
Glyur000602s00018914.1PF00400.27WD408498974.90E-06
Glyur000602s00018914.1PF00400.27WD409059391.40E-05
Glyur000602s00018914.1PF00400.27WD409469803.70E-07
Glyur000602s00018914.1PF00400.27WD40102910621.00E-06
Glyur000602s00018914.1PF00400.27WD40106611040.00012
Glyur000602s00018914.1PF00400.27WD40117812030.07


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control26.285
SRR1783600control26.449
SRR1783602moderate drought stress35.448
SRR1811619moderate drought stress35.198

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain32.017
DRR006520Root Summer glycyrrhizin high producing strain31.490
DRR006521Root Winter glycyrrhizin high producing strain27.374
DRR006522Root Winter glycyrrhizin high producing strain26.452
DRR006523Root Summer glycyrrhizin low producing strain33.379
DRR006524Root Summer glycyrrhizin low producing strain33.521
DRR006525Leaf Summer glycyrrhizin high producing strain13.036
DRR006526Leaf Summer glycyrrhizin high producing strain13.101

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)49.432
SRR2868004Drought Stress(Tissue:root)45.428
SRR2967015Control (Tissue:root)47.632

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave17.717
SRR9715740Leave18.023
SRR9715741Leave21.127
SRR9715739Root8.492
SRR9715742Root28.272
SRR9715743Root23.960

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h33.696
SRR8749028MeJA induced 9h47.310
SRR8749029MeJA induced 9h33.541
SRR8749030Uninduced35.722
SRR8749031Uninduced35.162
SRR8749032Uninduced26.497

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root52.817
SRR8400027Control-Root58.232

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved