Gene detail information of Glyur000603s00029227.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G07830.1 | 2.00E-121 | glucuronidase 2 |
| NR | KHN02016.1 | 0 | Heparanase-like protein 2 [Glycine soja] |
| Swissprot | tr|Q9FF10|HPSE1_ARATH | 2.00E-141 | Heparanase-like protein 1 (Precursor) |
| trEMBL | tr|I1JEC1|I1JEC1_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA02G12740.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00603 | 17429 | 31760 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH79 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K07964 | HPSE | EC:3.2.1.166 | Glycosaminoglycan degradation | map00531 |
| Proteoglycans in cancer | map05205 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000603s00029227.1 | PF03662.9 | Glyco_hydro_79n | 23 | 70 | 2.70E-20 |
| Glyur000603s00029227.1 | PF03662.9 | Glyco_hydro_79n | 71 | 316 | 5.10E-101 |
| Glyur000603s00029227.1 | PF03662.9 | Glyco_hydro_79n | 451 | 748 | 1.30E-129 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.034 |
| SRR1811619 | moderate drought stress | 0.095 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.336 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.417 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.209 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.427 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.127 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.142 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.000 |
| SRR2967015 | Control (Tissue:root) | 0.013 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.000 |
| SRR9715740 | Leave | 0.003 |
| SRR9715741 | Leave | 0.007 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.255 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.014 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.003 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.042 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.000 |
| SRR8400027 | Control-Root | 0.000 |