Gene detail information of Glyur000603s00029238.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G26610.16.00E-57C2H2-like zinc finger protein
NRXP_007157592.13.72E-173hypothetical protein PHAVU_002G082200g [Phaseolus vulgaris]
Swissprottr|Q39092|ZAT1_ARATH1.00E-12Zinc finger protein ZAT1
trEMBLtr|V7CL06|V7CL06_PHAVU1.00E-173Uncharacterized protein {ECO:0000313|EMBL:ESW29586.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00603119487121297-


Gene family

Gene familysubfamily
Transcription Factors FamilyC2H2
Ubiquitin FamilyRING
EAR motif-containing ProteinsC2H2


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

molecular_function

GO:0003676  nucleic acid binding

GO:0046872  metal ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000603s00029238.1PF13912.1zf-C2H2_626504.60E-05
Glyur000603s00029238.1PF13912.1zf-C2H2_61401610.00095
Glyur000603s00029238.1PF13912.1zf-C2H2_65175391.30E-09


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control0.554
SRR1783600control0.534
SRR1783602moderate drought stress0.324
SRR1811619moderate drought stress0.340

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain1.388
DRR006520Root Summer glycyrrhizin high producing strain1.414
DRR006521Root Winter glycyrrhizin high producing strain1.406
DRR006522Root Winter glycyrrhizin high producing strain1.438
DRR006523Root Summer glycyrrhizin low producing strain0.719
DRR006524Root Summer glycyrrhizin low producing strain0.741
DRR006525Leaf Summer glycyrrhizin high producing strain0.106
DRR006526Leaf Summer glycyrrhizin high producing strain0.160

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)0.494
SRR2868004Drought Stress(Tissue:root)0.848
SRR2967015Control (Tissue:root)0.595

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave0.076
SRR9715740Leave0.173
SRR9715741Leave0.050
SRR9715739Root0.028
SRR9715742Root1.201
SRR9715743Root1.254

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h0.531
SRR8749028MeJA induced 9h0.801
SRR8749029MeJA induced 9h0.684
SRR8749030Uninduced0.110
SRR8749031Uninduced0.318
SRR8749032Uninduced0.169

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root0.891
SRR8400027Control-Root0.837