Gene detail information of Glyur000603s00029238.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G26610.1 | 6.00E-57 | C2H2-like zinc finger protein |
| NR | XP_007157592.1 | 3.72E-173 | hypothetical protein PHAVU_002G082200g [Phaseolus vulgaris] |
| Swissprot | tr|Q39092|ZAT1_ARATH | 1.00E-12 | Zinc finger protein ZAT1 |
| trEMBL | tr|V7CL06|V7CL06_PHAVU | 1.00E-173 | Uncharacterized protein {ECO:0000313|EMBL:ESW29586.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00603 | 119487 | 121297 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | C2H2 |
| Ubiquitin Family | RING |
| EAR motif-containing Proteins | C2H2 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000603s00029238.1 | PF13912.1 | zf-C2H2_6 | 26 | 50 | 4.60E-05 |
| Glyur000603s00029238.1 | PF13912.1 | zf-C2H2_6 | 140 | 161 | 0.00095 |
| Glyur000603s00029238.1 | PF13912.1 | zf-C2H2_6 | 517 | 539 | 1.30E-09 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.554 |
| SRR1783600 | control | 0.534 |
| SRR1783602 | moderate drought stress | 0.324 |
| SRR1811619 | moderate drought stress | 0.340 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.388 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.414 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.406 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.438 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.719 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.741 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.106 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.160 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.494 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.848 |
| SRR2967015 | Control (Tissue:root) | 0.595 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.076 |
| SRR9715740 | Leave | 0.173 |
| SRR9715741 | Leave | 0.050 |
| SRR9715739 | Root | 0.028 |
| SRR9715742 | Root | 1.201 |
| SRR9715743 | Root | 1.254 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.531 |
| SRR8749028 | MeJA induced 9h | 0.801 |
| SRR8749029 | MeJA induced 9h | 0.684 |
| SRR8749030 | Uninduced | 0.110 |
| SRR8749031 | Uninduced | 0.318 |
| SRR8749032 | Uninduced | 0.169 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.891 |
| SRR8400027 | Control-Root | 0.837 |