Gene detail information of Glyur000605s00024910.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G19710.20aspartate kinase-homoserine dehydrogenase ii
NRXP_004504375.10PREDICTED: bifunctional aspartokinase/homoserine dehydrogenase 2, chloroplastic-like [Cicer arietinum]
COGYP_003570740.10Bifunctional aspartokinase/homoserine dehydrogenase II [Salinibacter ruber M8]
Swissprottr|O81852|AKH2_ARATH0Homoserine dehydrogenase (Precursor)
trEMBLtr|I1KS56|I1KS56_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA08G11370.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold006051125420982+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K12524thrA EC:2.7.2.4 1.1.1.3 Biosynthesis of amino acids map01230
Glycine, serine and threonine metabolismmap00260
Cysteine and methionine metabolismmap00270
Lysine biosynthesismap00300
Monobactam biosynthesismap00261


Gene Ontology

biological_process

GO:0006520  cellular amino acid metabolic process

GO:0008152  metabolic process

GO:0008652  cellular amino acid biosynthetic process

GO:0009067  aspartate family amino acid biosynthetic process

GO:0055114  oxidation-reduction process


molecular_function

GO:0004072  aspartate kinase activity

GO:0004412  homoserine dehydrogenase activity

GO:0016491  oxidoreductase activity

GO:0016597  amino acid binding

GO:0050661  NADP binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000605s00024910.1PF00696.23AA_kinase62811.60E-34
Glyur000605s00024910.1PF01842.20ACT3273822.70E-11
Glyur000605s00024910.1PF01842.20ACT4094633.40E-10
Glyur000605s00024910.1PF03447.11NAD_binding_34766127.00E-26
Glyur000605s00024910.1PF00742.14Homoserine_dh6208187.40E-56


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control50.748
SRR1783600control51.193
SRR1783602moderate drought stress48.321
SRR1811619moderate drought stress48.079

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain51.881
DRR006520Root Summer glycyrrhizin high producing strain51.374
DRR006521Root Winter glycyrrhizin high producing strain23.462
DRR006522Root Winter glycyrrhizin high producing strain22.880
DRR006523Root Summer glycyrrhizin low producing strain40.538
DRR006524Root Summer glycyrrhizin low producing strain40.375
DRR006525Leaf Summer glycyrrhizin high producing strain15.492
DRR006526Leaf Summer glycyrrhizin high producing strain15.469

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)37.133
SRR2868004Drought Stress(Tissue:root)31.736
SRR2967015Control (Tissue:root)31.847

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave14.494
SRR9715740Leave10.498
SRR9715741Leave11.664
SRR9715739Root10.940
SRR9715742Root39.913
SRR9715743Root36.188

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h88.904
SRR8749028MeJA induced 9h41.996
SRR8749029MeJA induced 9h74.540
SRR8749030Uninduced10.797
SRR8749031Uninduced13.772
SRR8749032Uninduced21.789

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root58.449
SRR8400027Control-Root57.970

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved