Gene detail

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Gene detail information of Glyur000605s00024914.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G37770.1	0	1-amino-cyclopropane-1-carboxylate synthase 8
NR	XP_003523634.1	0	PREDICTED: 1-aminocyclopropane-1-carboxylate synthase 3-like [Glycine max]
COG	YP_004582080.1	3.00E-70	1-aminocyclopropane-1-carboxylate deaminase [Frankia symbiont of Datisca glomerata]
Swissprot	tr\|Q00257\|1A12_CUCMA	0	1-aminocyclopropane-1-carboxylate synthase CMA101
trEMBL	tr\|I1JTT8\|I1JTT8_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA04G05150.1}

Sequence

Transcript Sequence

>Glyur000605s00024914.1
TATATAGAACTTAAAAGCACGATGGACATGTTGTCTAGGAAGGTTAGTCAGGACTCTCATGGCCAAGACTCTTCTTACTTTCTAGGATGGCAAGAGTACGAGAAGAATCCTTATCACCCCATTCAAAACCCAACGGGAATCATTCAGATGGGACTTGCTGAGAATCAGCTTTCATTTGACCTTCTTGAATCATGGCTCCAAAGAAATCCTGATATTGTGGGGTTGAAGAAAGATGGGNTATCCGTATTTAAAGAACTCGCTCTATTCCAGGACTACCACGGTTTACCTGCTTTAAAAAATGAACTGGTGGACTTTATGGCAAAAATAAGAGGAAATGGAATCAAATTTGGGTCGGAGAATCTTGTCCTCACAGCTGGCGCAACTCCCGCAAATGAGATTCTCGTGTTTTGTCTCGCTGATCCCGGCGAAGCTTTCATTGTTCCCACACCGTATTATCCAGGGTTCGACAGAGATCTTAAATGGCGCACAGGGGTTGAGATTGTTCCAATGCATTGCTCGAGCTCAAACGGTTTCAGAATCACTTCCTCTGCTTTAGAACAAGCCTACGAACAAGCACAAAAACAGAACCTAACCGTCAAAGGGGTGCTAGTAACCAACCCTTCAAACCCACTAGGCATAACCATGACAAAAACGGAGCTAAACCTTCTAGTTGACTTCGCAATTGAAAAGGGCATTCACATAATAAGCGATGAAATCTACTCAGGAACAGTCTTCGACTCACCANGATTCGTAAGCACAATGGAAGTTGTAAACGAGAGAGGTCTTTGTGGTGATGGCAATAGCATATCGAACCGCATTCACATCGTTTATAGTCTCTCCAAGGATCTTGGAGTTCCGGGTTTTCGTGTGGGAATGGTTTATTCCAACAATGAAATGGTTGTTGCTGCTGCCACCAAAATGTCAAGCTTTGGACTCGTTTCCTCACAAACTCAGTATTTGCTTGCAAATTTACTCGCGGATGAGGAATTCACTATGAAATACATGGAGGAGACTCAGAGGAGGCTTAAGAGGCGCAAGGAGATGCTTGTGTCTGGTCTCAGAAACGCGGGGATTCGGTGTTTGAAGAGCAATGCAGGGTTGTTCTGTTGGGTGGACATGAGGCATCTTTTGGGTTCTGCCACTTTTCATGCAGAGAAGGAGCTTTGGAAAAAGATTCTTTACCGTGTTGGTTTGAACATTTCTCCAGGCTCTTCTTGCCACTGCTCCGAACCTGGGTGGTTCAGGATTTGCTTTGCCAACATGTCTGAAGAAACATTGCGAGTCGCTATGCGGCGGATGAAGGCCTTTACTACAGACTCAACCACCCTCTCTGCTTCTGTGAAACAACAATCTGTCACTACTAATACCAATTATACCACGGGAAGGGCAATTGCTAAGTGGGTTTTCCCGTTATCGTCGTGTGAATAA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00605	43289	46147	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01762	ACS	EC:4.4.1.14	Cysteine and methionine metabolism	map00270

Gene Ontology

biological_process
GO:0009058 biosynthetic process

molecular_function GO:0003824 catalytic activity GO:0030170 pyridoxal phosphate binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000605s00024914.1	PF00155.16	Aminotran_1_2	48	432	3.00E-100

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.025
SRR1783600	control	0.015
SRR1783602	moderate drought stress	0.044
SRR1811619	moderate drought stress	0.043

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.175
DRR006524	Root Summer glycyrrhizin low producing strain	0.232
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.803
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.915

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	0.089
SRR2868004	Drought Stress(Tissue:root)	0.203
SRR2967015	Control (Tissue:root)	0.032

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	0.402
SRR9715740	Leave	0.412
SRR9715741	Leave	0.125
SRR9715739	Root	0.000
SRR9715742	Root	0.256
SRR9715743	Root	0.312

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.095
SRR8749028	MeJA induced 9h	1.119
SRR8749029	MeJA induced 9h	0.562
SRR8749030	Uninduced	0.213
SRR8749031	Uninduced	0.107
SRR8749032	Uninduced	0.104

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	0.138
SRR8400027	Control-Root	0.304