Gene detail information of Glyur000605s00024917.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G65790.1 | 7.00E-65 | myb domain protein 68 |
| NR | XP_003527745.1 | 1.17E-135 | PREDICTED: transcription factor RAX3 [Glycine max] |
| Swissprot | tr|Q9M2Y9|RAX3_ARATH | 1.00E-81 | Transcription factor RAX3 |
| trEMBL | tr|V7AT92|V7AT92_PHAVU | 4.00E-135 | Uncharacterized protein {ECO:0000313|EMBL:ESW08789.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00605 | 62352 | 63955 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | MYB |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000605s00024917.1 | PF00249.26 | Myb_DNA-binding | 14 | 62 | 1.80E-14 |
| Glyur000605s00024917.1 | PF00249.26 | Myb_DNA-binding | 69 | 111 | 1.40E-09 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.833 |
| SRR1783600 | control | 3.850 |
| SRR1783602 | moderate drought stress | 6.196 |
| SRR1811619 | moderate drought stress | 5.960 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.087 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.085 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 19.345 |
| SRR2868004 | Drought Stress(Tissue:root) | 20.754 |
| SRR2967015 | Control (Tissue:root) | 19.936 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.148 |
| SRR9715740 | Leave | 0.141 |
| SRR9715741 | Leave | 0.260 |
| SRR9715739 | Root | 8.327 |
| SRR9715742 | Root | 4.112 |
| SRR9715743 | Root | 4.998 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.660 |
| SRR8749028 | MeJA induced 9h | 3.280 |
| SRR8749029 | MeJA induced 9h | 1.996 |
| SRR8749030 | Uninduced | 5.819 |
| SRR8749031 | Uninduced | 2.045 |
| SRR8749032 | Uninduced | 7.393 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 22.235 |
| SRR8400027 | Control-Root | 21.700 |