Gene detail information of Glyur000605s00024921.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G10070.22.00E-138branched-chain amino acid transaminase 2
NRNP_001239909.10uncharacterized protein LOC100782644 [Glycine max]
COGNP_391734.22.00E-83branched-chain-amino acid aminotransferase 2 [Bacillus subtilis subsp. subtilis str. 168]
Swissprottr|Q9M439|BCAT2_ARATH1.00E-172Branched-chain-amino-acid aminotransferase 2, chloroplastic (Precursor)
trEMBLtr|C6TLT9|C6TLT9_SOYBN0Branched-chain-amino-acid aminotransferase {ECO:0000256|RuleBase:RU004517}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold006057204776874-


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00826E2.6.1.42, ilvE EC:2.6.1.42 2-Oxocarboxylic acid metabolism map01210
Biosynthesis of amino acidsmap01230
Cysteine and methionine metabolismmap00270
Valine, leucine and isoleucine degradationmap00280
Valine, leucine and isoleucine biosynthesismap00290
Pantothenate and CoA biosynthesismap00770


Gene Ontology

biological_process

GO:0008152  metabolic process

GO:0009081  branched-chain amino acid metabolic process


molecular_function

GO:0003824  catalytic activity

GO:0004084  branched-chain-amino-acid transaminase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000605s00024921.1PF01063.14Aminotran_4613022.60E-33


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control0.518
SRR1783600control0.545
SRR1783602moderate drought stress1.180
SRR1811619moderate drought stress1.196

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain0.787
DRR006520Root Summer glycyrrhizin high producing strain0.779
DRR006521Root Winter glycyrrhizin high producing strain0.608
DRR006522Root Winter glycyrrhizin high producing strain0.519
DRR006523Root Summer glycyrrhizin low producing strain0.302
DRR006524Root Summer glycyrrhizin low producing strain0.427
DRR006525Leaf Summer glycyrrhizin high producing strain14.912
DRR006526Leaf Summer glycyrrhizin high producing strain14.426

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)20.593
SRR2868004Drought Stress(Tissue:root)57.333
SRR2967015Control (Tissue:root)100.396

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave11.017
SRR9715740Leave5.346
SRR9715741Leave12.596
SRR9715739Root0.252
SRR9715742Root1.967
SRR9715743Root2.356

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h20.957
SRR8749028MeJA induced 9h45.754
SRR8749029MeJA induced 9h26.175
SRR8749030Uninduced30.799
SRR8749031Uninduced172.861
SRR8749032Uninduced187.000

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root6.210
SRR8400027Control-Root6.557

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved