Gene detail information of Glyur000605s00024925.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G08150.1 | 5.00E-101 | KNOTTED-like from Arabidopsis thaliana |
| NR | NP_001253999.1 | 3.20E-174 | homeobox protein knotted-1-like 2-like [Glycine max] |
| Swissprot | tr|O04135|KNAP2_MALDO | 7.00E-154 | Homeobox protein knotted-1-like 2 |
| trEMBL | tr|I1M8Y1|I1M8Y1_SOYBN | 1.00E-174 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA14G10430.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00605 | 98957 | 102717 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | HB |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000605s00024925.1 | PF03790.8 | KNOX1 | 106 | 149 | 2.60E-21 |
| Glyur000605s00024925.1 | PF03791.8 | KNOX2 | 164 | 209 | 5.90E-24 |
| Glyur000605s00024925.1 | PF03789.8 | ELK | 264 | 285 | 3.90E-09 |
| Glyur000605s00024925.1 | PF05920.6 | Homeobox_KN | 304 | 343 | 5.00E-15 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 68.437 |
| SRR1783600 | control | 68.346 |
| SRR1783602 | moderate drought stress | 59.132 |
| SRR1811619 | moderate drought stress | 58.579 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 84.553 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 84.073 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 40.157 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 38.724 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 82.859 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 81.927 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.059 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.058 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 1.072 |
| SRR2868004 | Drought Stress(Tissue:root) | 2.098 |
| SRR2967015 | Control (Tissue:root) | 1.710 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.040 |
| SRR9715740 | Leave | 0.030 |
| SRR9715741 | Leave | 0.000 |
| SRR9715739 | Root | 30.567 |
| SRR9715742 | Root | 35.445 |
| SRR9715743 | Root | 34.983 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 17.950 |
| SRR8749028 | MeJA induced 9h | 42.891 |
| SRR8749029 | MeJA induced 9h | 15.402 |
| SRR8749030 | Uninduced | 18.845 |
| SRR8749031 | Uninduced | 9.440 |
| SRR8749032 | Uninduced | 8.527 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 23.549 |
| SRR8400027 | Control-Root | 39.127 |