Gene detail information of Glyur000605s00024928.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G29190.19.00E-68Zinc finger C-x8-C-x5-C-x3-H type family protein
NRXP_003603107.12.71E-118Zinc finger CCCH domain-containing protein [Medicago truncatula]
Swissprottr|Q9M0G2|C3H49_ARATH2.00E-81Zinc finger CCCH domain-containing protein 49
trEMBLtr|G7J714|G7J714_MEDTR1.00E-118Zinc finger CCCH domain protein {ECO:0000313|EMBL:AES73358.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00605121960122862+


Gene family

Gene familysubfamily
Transcription Factors FamilyC3H


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0046872  metal ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000605s00024928.1PF00642.19zf-CCCH1111334.60E-07


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control2.869
SRR1783600control2.875
SRR1783602moderate drought stress13.561
SRR1811619moderate drought stress13.188

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain13.228
DRR006520Root Summer glycyrrhizin high producing strain15.778
DRR006521Root Winter glycyrrhizin high producing strain124.894
DRR006522Root Winter glycyrrhizin high producing strain122.186
DRR006523Root Summer glycyrrhizin low producing strain5.261
DRR006524Root Summer glycyrrhizin low producing strain5.280
DRR006525Leaf Summer glycyrrhizin high producing strain25.836
DRR006526Leaf Summer glycyrrhizin high producing strain25.127

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)38.752
SRR2868004Drought Stress(Tissue:root)116.007
SRR2967015Control (Tissue:root)270.020

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave22.057
SRR9715740Leave18.090
SRR9715741Leave35.724
SRR9715739Root14.773
SRR9715742Root10.162
SRR9715743Root10.040

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h83.206
SRR8749028MeJA induced 9h525.205
SRR8749029MeJA induced 9h268.591
SRR8749030Uninduced44.420
SRR8749031Uninduced128.025
SRR8749032Uninduced141.942

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root15.576
SRR8400027Control-Root11.343

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved