Gene detail

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Gene detail information of Glyur000606s00017333.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G57850.1	5.00E-120	D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein
NR	KHN18195.1	0	Branched-chain-amino-acid aminotransferase-like protein 3, chloroplastic [Glycine soja]
COG	YP_847315.1	2.00E-62	class IV aminotransferase [Syntrophobacter fumaroxidans MPOB]
Swissprot	tr\|Q8L493\|DAAA_ARATH	4.00E-148	D-amino-acid transaminase, chloroplastic {ECO:0000303\|PubMed:18318836} (Precursor)
trEMBL	tr\|I1K9A2\|I1K9A2_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA06G08700.1}

Sequence

Transcript Sequence

>Glyur000606s00017333.1
AAAAACTGCACATTACTGGTTTAATAAGCGAAACAAATTTATTTATATTATTTCCCAACCAGCATCACCCTATATAAATTTGGTTGATCTTGATCACCCTCTAACTTCAAATGCAAGTCGNCGAAATCTCTCCTTTCTGATACTTGGACCTCCACAATTTCAACGAGAAAAATGCATGCTGCGACAAATTGCAATCAATCTGGACACTTTGTTTATTCTAAATCTGAAATATCTGATGTTCCAATATTGTCTTGCTCCGAGGCCATTGAAAAGCTAAAATCATTCAGAGAAAAGCTGAAGGGCAAACAGCAATACCTTGCCATGTATTCTAGCATTTTTGGCGGAATAACAACAGATCCGGCTGCTATGGTTATCCCTATGGATGACCATATGGTCCATAGGGGCCATGGTGTCTTTGATACCACAGCAATAATGGACGGATACCTCTACGAGTTAGATCAACACCTTGATCGCTTTCTAAGGTCAGCATCTATGGCTAAAATAAATCCCCCATTTGAACGTGAAAGCATACGAAGAATACTCATACAAACAGTAAGTGCTTCCAAGTGTAGAAATGGATCACTGAGGTATTGGCTCTCAGCAGGACCTGGAGATTTCGAGCTATCTCCCTCAGGTTGCCACCAATCGGGTCTTTATGCAATTGGAGTTAAAGTGGTGACTTCATCTGTTCCCATTAAACCTCCTCAATTTGCAACCATTAAGAGTGTGAATTACCTTCCAAATGTGTTGTCTAAGATGGAAGCTGAAGAAGTTGGTGCTTTTGCAGGCATTTGGCTTGACAGTGATGGGTTTGTTGCAGAAGGGCCTAGCATGAACGTGGCTTTTGTCAGTAAAGAGAAGGAACTTGTAATGCCTCGATGTGAACAGATTCTAAGTGGCTGCACTGCCAAGAGGGTTTTGACTCTTGCTGAGTGTTTGGTGAGGGAGGGTAAGCTACAAGGGATAGGGATGAAAAATGTGACTGTGGAGGAAGGGAAGAAAGCAGATGAAATGATGCTTCTTGGTAGTGGAATTCTTGTTCGCCCTGTAGTACAGTGGGATGAGCAGATCATTGGAAATGGGCAAATGCAGGGCCGCCAGGGCACAACAAGTAGGCCCATTAATGTTGCAAACCGACCCGGTTTGATGCGGATTGGACCAGACTGCATACCCACCTCTAGCAAAGAAGGCCCTATAACCCGAGATCTCTTGAAATTAGTTGTCGAAGATATGAAATCCGCCCTCCCAACTTTTGGCTTTCCTGTTCCTTATTAA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00606	12279	14096	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K18482	ADCL	EC:4.1.3.38	Folate biosynthesis	map00790

Gene Ontology

biological_process
GO:0008152 metabolic process

molecular_function GO:0003824 catalytic activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000606s00017333.1	PF01063.14	Aminotran_4	94	304	4.50E-32

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.783
SRR1783600	control	0.741
SRR1783602	moderate drought stress	1.138
SRR1811619	moderate drought stress	1.100

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.665
DRR006520	Root Summer glycyrrhizin high producing strain	0.884
DRR006521	Root Winter glycyrrhizin high producing strain	8.457
DRR006522	Root Winter glycyrrhizin high producing strain	8.117
DRR006523	Root Summer glycyrrhizin low producing strain	0.300
DRR006524	Root Summer glycyrrhizin low producing strain	0.268
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.254
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.314

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	2.239
SRR2868004	Drought Stress(Tissue:root)	1.704
SRR2967015	Control (Tissue:root)	1.042

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	0.051
SRR9715740	Leave	0.000
SRR9715741	Leave	0.000
SRR9715739	Root	0.000
SRR9715742	Root	0.024
SRR9715743	Root	0.000

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	23.909
SRR8749028	MeJA induced 9h	116.222
SRR8749029	MeJA induced 9h	107.175
SRR8749030	Uninduced	89.811
SRR8749031	Uninduced	206.023
SRR8749032	Uninduced	394.483

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	2.701
SRR8400027	Control-Root	1.476