Gene detail information of Glyur000606s00017337.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G29000.1 | 4.00E-111 | Tesmin/TSO1-like CXC domain-containing protein |
| NR | XP_003523732.2 | 0 | PREDICTED: protein tesmin/TSO1-like CXC 5-like [Glycine max] |
| Swissprot | tr|Q9SZD1|TCX5_ARATH | 5.00E-137 | Protein tesmin/TSO1-like CXC 5 |
| trEMBL | tr|K7KIV6|K7KIV6_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA04G08670.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00606 | 38502 | 43691 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | CPP |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000606s00017337.1 | PF03638.10 | TCR | 145 | 183 | 4.30E-12 |
| Glyur000606s00017337.1 | PF03638.10 | TCR | 229 | 268 | 4.30E-13 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.970 |
| SRR1783600 | control | 0.943 |
| SRR1783602 | moderate drought stress | 1.635 |
| SRR1811619 | moderate drought stress | 1.599 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.593 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.778 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.212 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.239 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.781 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.830 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.344 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.303 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 1.566 |
| SRR2868004 | Drought Stress(Tissue:root) | 1.597 |
| SRR2967015 | Control (Tissue:root) | 1.644 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.766 |
| SRR9715740 | Leave | 0.413 |
| SRR9715741 | Leave | 0.449 |
| SRR9715739 | Root | 0.084 |
| SRR9715742 | Root | 0.667 |
| SRR9715743 | Root | 0.412 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.209 |
| SRR8749028 | MeJA induced 9h | 0.984 |
| SRR8749029 | MeJA induced 9h | 0.176 |
| SRR8749030 | Uninduced | 0.083 |
| SRR8749031 | Uninduced | 0.042 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 1.243 |
| SRR8400027 | Control-Root | 1.045 |