Gene detail information of Glyur000606s00017342.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G27600.2 | 3.00E-84 | Nucleotide-diphospho-sugar transferases superfamily protein |
| NR | XP_006577851.1 | 0 | PREDICTED: uncharacterized protein LOC100808765 isoform X1 [Glycine max] |
| Swissprot | tr|Q9SXC4|IRX9H_ARATH | 1.00E-111 | Probable beta-1,4-xylosyltransferase IRX9H |
| trEMBL | tr|I1JUU0|I1JUU0_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA04G08720.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00606 | 83007 | 86350 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GT43 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000606s00017342.1 | PF03360.11 | Glyco_transf_43 | 209 | 421 | 2.10E-54 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.126 |
| SRR1783600 | control | 4.080 |
| SRR1783602 | moderate drought stress | 3.106 |
| SRR1811619 | moderate drought stress | 2.918 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.751 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.892 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.689 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.705 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.974 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.076 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.166 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.157 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 11.097 |
| SRR2868004 | Drought Stress(Tissue:root) | 9.823 |
| SRR2967015 | Control (Tissue:root) | 10.095 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 2.984 |
| SRR9715740 | Leave | 2.709 |
| SRR9715741 | Leave | 2.777 |
| SRR9715739 | Root | 1.892 |
| SRR9715742 | Root | 3.633 |
| SRR9715743 | Root | 2.644 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.499 |
| SRR8749028 | MeJA induced 9h | 0.736 |
| SRR8749029 | MeJA induced 9h | 0.491 |
| SRR8749030 | Uninduced | 1.696 |
| SRR8749031 | Uninduced | 0.718 |
| SRR8749032 | Uninduced | 0.488 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 12.913 |
| SRR8400027 | Control-Root | 13.500 |