Gene detail information of Glyur000606s00017356.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G20030.17.00E-62RING/U-box superfamily protein
NRXP_006581445.14.55E-170PREDICTED: putative RING-H2 finger protein ATL12-like [Glycine max]
Swissprottr|Q9SL78|ATL12_ARATH1.00E-78Putative RING-H2 finger protein ATL12 (Precursor)
trEMBLtr|I1K9D1|I1K9D1_SOYBN2.00E-170Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA06G08930.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00606137544138737-


Gene family

Gene familysubfamily
Ubiquitin FamilyRING


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0005515  protein binding

GO:0008270  zinc ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000606s00017356.1PF13639.1zf-RING_21281714.50E-15


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control17.377
SRR1783600control17.289
SRR1783602moderate drought stress18.205
SRR1811619moderate drought stress18.389

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain9.833
DRR006520Root Summer glycyrrhizin high producing strain9.576
DRR006521Root Winter glycyrrhizin high producing strain0.093
DRR006522Root Winter glycyrrhizin high producing strain0.091
DRR006523Root Summer glycyrrhizin low producing strain1.204
DRR006524Root Summer glycyrrhizin low producing strain1.507
DRR006525Leaf Summer glycyrrhizin high producing strain0.735
DRR006526Leaf Summer glycyrrhizin high producing strain0.854

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)13.959
SRR2868004Drought Stress(Tissue:root)22.162
SRR2967015Control (Tissue:root)18.807

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave1.115
SRR9715740Leave1.604
SRR9715741Leave2.165
SRR9715739Root2.375
SRR9715742Root11.036
SRR9715743Root9.113

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h0.366
SRR8749028MeJA induced 9h0.773
SRR8749029MeJA induced 9h0.563
SRR8749030Uninduced0.636
SRR8749031Uninduced0.367
SRR8749032Uninduced0.315

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root27.729
SRR8400027Control-Root19.192

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved