Gene detail information of Glyur000607s00021610.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G32600.1 | 5.00E-116 | RING/U-box superfamily protein |
| NR | XP_004498626.1 | 0 | PREDICTED: E3 ubiquitin-protein ligase At1g12760-like isoform X1 [Cicer arietinum] |
| Swissprot | tr|Q93Z92|RING4_ARATH | 3.00E-42 | E3 ubiquitin-protein ligase At4g11680 |
| trEMBL | tr|K7M6F7|K7M6F7_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA14G16181.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00607 | 66330 | 69107 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000607s00021610.1 | PF13639.1 | zf-RING_2 | 373 | 415 | 2.50E-14 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 13.627 |
| SRR1783600 | control | 13.621 |
| SRR1783602 | moderate drought stress | 20.158 |
| SRR1811619 | moderate drought stress | 19.968 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 19.007 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 18.939 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 31.216 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 30.125 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 30.758 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 30.908 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 7.590 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 7.648 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 26.894 |
| SRR2868004 | Drought Stress(Tissue:root) | 35.163 |
| SRR2967015 | Control (Tissue:root) | 32.171 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 17.113 |
| SRR9715740 | Leave | 19.098 |
| SRR9715741 | Leave | 22.378 |
| SRR9715739 | Root | 11.619 |
| SRR9715742 | Root | 19.990 |
| SRR9715743 | Root | 18.775 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 30.623 |
| SRR8749028 | MeJA induced 9h | 32.202 |
| SRR8749029 | MeJA induced 9h | 37.407 |
| SRR8749030 | Uninduced | 33.336 |
| SRR8749031 | Uninduced | 32.966 |
| SRR8749032 | Uninduced | 35.230 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 22.534 |
| SRR8400027 | Control-Root | 21.456 |