Gene detail information of Glyur000608s00025874.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G10560.12.00E-156plant U-box 18
NRXP_004489855.10PREDICTED: U-box domain-containing protein 19-like [Cicer arietinum]
COGYP_001957949.13.00E-14hypothetical protein Aasi_0849 [Candidatus Amoebophilus asiaticus 5a2]
Swissprottr|Q9XIJ5|PUB18_ARATH0U-box domain-containing protein 18
trEMBLtr|G7K1E9|G7K1E9_MEDTR0Armadillo/beta-catenin repeat protein {ECO:0000313|EMBL:AES96202.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold006081552117656+


Gene family

Gene familysubfamily
Ubiquitin FamilyU_box


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

biological_process

GO:0016567  protein ubiquitination


molecular_function

GO:0004842  ubiquitin-protein transferase activity

GO:0005488  binding

GO:0005515  protein binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000608s00025874.1PF04564.10U-box2943632.00E-15
Glyur000608s00025874.1PF00514.18Arm4354705.90E-07


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control0.114
SRR1783600control0.034
SRR1783602moderate drought stress0.194
SRR1811619moderate drought stress0.176

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain19.576
DRR006520Root Summer glycyrrhizin high producing strain18.801
DRR006521Root Winter glycyrrhizin high producing strain2.978
DRR006522Root Winter glycyrrhizin high producing strain2.881
DRR006523Root Summer glycyrrhizin low producing strain36.155
DRR006524Root Summer glycyrrhizin low producing strain35.459
DRR006525Leaf Summer glycyrrhizin high producing strain4.840
DRR006526Leaf Summer glycyrrhizin high producing strain4.659

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)1.630
SRR2868004Drought Stress(Tissue:root)2.674
SRR2967015Control (Tissue:root)14.531

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave13.041
SRR9715740Leave1.416
SRR9715741Leave8.564
SRR9715739Root2.314
SRR9715742Root11.579
SRR9715743Root9.203

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h28.766
SRR8749028MeJA induced 9h32.708
SRR8749029MeJA induced 9h16.679
SRR8749030Uninduced7.980
SRR8749031Uninduced18.548
SRR8749032Uninduced8.987

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root1.880
SRR8400027Control-Root0.970

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved