Gene detail information of Glyur000610s00022573.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G54640.11.00E-126tryptophan synthase alpha chain
NRAFK33699.10unknown [Lotus japonicus]
COGYP_005069277.18.00E-103tryptophan synthase alpha chain [Arthrospira platensis NIES-39]
Swissprottr|O22765|TRPA1_ARATH4.00E-159Tryptophan synthase alpha chain
trEMBLtr|I3S0A7|I3S0A7_LOTJA0Uncharacterized protein {ECO:0000313|EMBL:AFK33699.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold006102187225745+


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01695trpA EC:4.2.1.20 Biosynthesis of amino acids map01230
Glycine, serine and threonine metabolismmap00260
Phenylalanine, tyrosine and tryptophan biosynthesismap00400


Gene Ontology

biological_process

GO:0006568  tryptophan metabolic process

GO:0008152  metabolic process


molecular_function

GO:0003824  catalytic activity

GO:0004834  tryptophan synthase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000610s00022573.1PF00290.15Trp_syntA543094.80E-97


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control76.915
SRR1783600control77.024
SRR1783602moderate drought stress70.205
SRR1811619moderate drought stress69.743

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain70.744
DRR006520Root Summer glycyrrhizin high producing strain70.462
DRR006521Root Winter glycyrrhizin high producing strain55.771
DRR006522Root Winter glycyrrhizin high producing strain54.087
DRR006523Root Summer glycyrrhizin low producing strain68.543
DRR006524Root Summer glycyrrhizin low producing strain68.856
DRR006525Leaf Summer glycyrrhizin high producing strain24.980
DRR006526Leaf Summer glycyrrhizin high producing strain24.627

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)76.434
SRR2868004Drought Stress(Tissue:root)67.730
SRR2967015Control (Tissue:root)64.682

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave30.281
SRR9715740Leave32.818
SRR9715741Leave34.059
SRR9715739Root54.146
SRR9715742Root52.409
SRR9715743Root52.189

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h71.755
SRR8749028MeJA induced 9h54.372
SRR8749029MeJA induced 9h63.928
SRR8749030Uninduced35.002
SRR8749031Uninduced16.786
SRR8749032Uninduced33.336

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root85.142
SRR8400027Control-Root87.440

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved