Gene detail information of Glyur000610s00022575.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G54610.10histone acetyltransferase of the GNAT family 1
NRXP_004493735.10PREDICTED: histone acetyltransferase GCN5-like [Cicer arietinum]
Swissprottr|Q9AR19|GCN5_ARATH0Histone acetyltransferase GCN5
trEMBLtr|I1N9L6|I1N9L6_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA19G34340.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold006103199939779-


Gene family

Gene familysubfamily
Transcription Factors FamilyGNAT


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K06062PCAF, KAT2, GCN5 EC:2.3.1.48 Notch signaling pathway map04330
Thyroid hormone signaling pathwaymap04919
Viral carcinogenesismap05203
HTLV-I infectionmap05166


Gene Ontology

molecular_function

GO:0005515  protein binding

GO:0008080  N-acetyltransferase activity



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000610s00022575.1PF00583.19Acetyltransf_12433141.10E-07
Glyur000610s00022575.1PF00439.20Bromodomain4455206.70E-23


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control20.102
SRR1783600control19.837
SRR1783602moderate drought stress18.909
SRR1811619moderate drought stress18.455

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain17.102
DRR006520Root Summer glycyrrhizin high producing strain17.204
DRR006521Root Winter glycyrrhizin high producing strain7.804
DRR006522Root Winter glycyrrhizin high producing strain7.698
DRR006523Root Summer glycyrrhizin low producing strain12.475
DRR006524Root Summer glycyrrhizin low producing strain12.261
DRR006525Leaf Summer glycyrrhizin high producing strain10.860
DRR006526Leaf Summer glycyrrhizin high producing strain10.809

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)23.201
SRR2868004Drought Stress(Tissue:root)20.186
SRR2967015Control (Tissue:root)20.627

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave6.709
SRR9715740Leave14.870
SRR9715741Leave9.576
SRR9715739Root12.029
SRR9715742Root21.202
SRR9715743Root17.103

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h16.013
SRR8749028MeJA induced 9h20.251
SRR8749029MeJA induced 9h10.373
SRR8749030Uninduced3.924
SRR8749031Uninduced2.429
SRR8749032Uninduced2.508

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root29.114
SRR8400027Control-Root26.939

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved