Gene detail information of Glyur000611s00026448.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G39800.40delta1-pyrroline-5-carboxylate synthase 1
NRKHN07602.10Delta-1-pyrroline-5-carboxylate synthase [Glycine soja]
COGYP_007082681.11.00E-93gamma-glutamyl phosphate reductase [Pleurocapsa sp. PCC 7327]
Swissprottr|P32296|P5CS_VIGAC0Gamma-glutamyl phosphate reductase
trEMBLtr|Q6RUF7|Q6RUF7_SOYBN0Delta-pyrroline-5-carboxylate synthetase {ECO:0000313|EMBL:AAR86688.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold006118627793503+


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K12657ALDH18A1, P5CS EC:2.7.2.11 1.2.1.41 Biosynthesis of amino acids map01230
Arginine and proline metabolismmap00330


Gene Ontology

biological_process

GO:0006561  proline biosynthetic process

GO:0008152  metabolic process

GO:0055114  oxidation-reduction process


cellular_component

GO:0005737  cytoplasm


molecular_function

GO:0003824  catalytic activity

GO:0004349  glutamate 5-kinase activity

GO:0016491  oxidoreductase activity

GO:0016620  oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000611s00026448.1PF00696.23AA_kinase152601.60E-35
Glyur000611s00026448.1PF00171.17Aldedh2925273.80E-08


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control23.240
SRR1783600control23.287
SRR1783602moderate drought stress30.670
SRR1811619moderate drought stress30.367

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain23.653
DRR006520Root Summer glycyrrhizin high producing strain23.297
DRR006521Root Winter glycyrrhizin high producing strain23.085
DRR006522Root Winter glycyrrhizin high producing strain21.235
DRR006523Root Summer glycyrrhizin low producing strain19.502
DRR006524Root Summer glycyrrhizin low producing strain20.061
DRR006525Leaf Summer glycyrrhizin high producing strain15.915
DRR006526Leaf Summer glycyrrhizin high producing strain15.561

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)26.124
SRR2868004Drought Stress(Tissue:root)28.963
SRR2967015Control (Tissue:root)31.428

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave15.627
SRR9715740Leave16.039
SRR9715741Leave16.614
SRR9715739Root6.702
SRR9715742Root18.368
SRR9715743Root16.245

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h16.703
SRR8749028MeJA induced 9h23.069
SRR8749029MeJA induced 9h15.872
SRR8749030Uninduced39.574
SRR8749031Uninduced18.569
SRR8749032Uninduced19.595

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root29.480
SRR8400027Control-Root27.117