Gene detail information of Glyur000611s00026448.1 |
Functional Annotation
Database | Orthologs | E value | Annotation |
---|---|---|---|
TAIR | AT2G39800.4 | 0 | delta1-pyrroline-5-carboxylate synthase 1 |
NR | KHN07602.1 | 0 | Delta-1-pyrroline-5-carboxylate synthase [Glycine soja] |
COG | YP_007082681.1 | 1.00E-93 | gamma-glutamyl phosphate reductase [Pleurocapsa sp. PCC 7327] |
Swissprot | tr|P32296|P5CS_VIGAC | 0 | Gamma-glutamyl phosphate reductase |
trEMBL | tr|Q6RUF7|Q6RUF7_SOYBN | 0 | Delta-pyrroline-5-carboxylate synthetase {ECO:0000313|EMBL:AAR86688.1} |
Sequence
Transcript Sequence |
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Protein Sequence |
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Location information(JBrowse)
Scaffold | Start | End | Strand |
---|---|---|---|
Scaffold00611 | 86277 | 93503 | + |
Gene family
Gene family | subfamily |
---|---|
-- | -- |
KEGG pathway
KO | Enzyme | Enzyme ID | pathway | mapID |
---|---|---|---|---|
K12657 | ALDH18A1, P5CS | EC:2.7.2.11 1.2.1.41 | Biosynthesis of amino acids | map01230 |
Arginine and proline metabolism | map00330 |
Gene Ontology
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Pfam domain
Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
---|---|---|---|---|---|
Glyur000611s00026448.1 | PF00696.23 | AA_kinase | 15 | 260 | 1.60E-35 |
Glyur000611s00026448.1 | PF00171.17 | Aldedh | 292 | 527 | 3.80E-08 |
Expression pattern
SRA Experiment | Description | TPM |
---|---|---|
SRR1783599 | control | 23.240 |
SRR1783600 | control | 23.287 |
SRR1783602 | moderate drought stress | 30.670 |
SRR1811619 | moderate drought stress | 30.367 |
SRA Experiment | Description | TPM |
---|---|---|
DRR006519 | Root Summer glycyrrhizin high producing strain | 23.653 |
DRR006520 | Root Summer glycyrrhizin high producing strain | 23.297 |
DRR006521 | Root Winter glycyrrhizin high producing strain | 23.085 |
DRR006522 | Root Winter glycyrrhizin high producing strain | 21.235 |
DRR006523 | Root Summer glycyrrhizin low producing strain | 19.502 |
DRR006524 | Root Summer glycyrrhizin low producing strain | 20.061 |
DRR006525 | Leaf Summer glycyrrhizin high producing strain | 15.915 |
DRR006526 | Leaf Summer glycyrrhizin high producing strain | 15.561 |
SRA Experiment | Description | TPM |
---|---|---|
SRR2867873 | Salt Stress(Tissue:root) | 26.124 |
SRR2868004 | Drought Stress(Tissue:root) | 28.963 |
SRR2967015 | Control (Tissue:root) | 31.428 |
SRA Experiment | Description | TPM |
---|---|---|
SRR9715738 | Leave | 15.627 |
SRR9715740 | Leave | 16.039 |
SRR9715741 | Leave | 16.614 |
SRR9715739 | Root | 6.702 |
SRR9715742 | Root | 18.368 |
SRR9715743 | Root | 16.245 |
SRA Experiment | Description | TPM |
---|---|---|
SRR8749027 | MeJA induced 9h | 16.703 |
SRR8749028 | MeJA induced 9h | 23.069 |
SRR8749029 | MeJA induced 9h | 15.872 |
SRR8749030 | Uninduced | 39.574 |
SRR8749031 | Uninduced | 18.569 |
SRR8749032 | Uninduced | 19.595 |
SRA Experiment | Description | TPM |
---|---|---|
SRR8400026 | NaCl treatment-Root | 29.480 |
SRR8400027 | Control-Root | 27.117 |