Gene detail information of Glyur000613s00030319.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G71840.1 | 8.00E-102 | transducin family protein / WD-40 repeat family protein |
| NR | XP_007132556.1 | 2.54E-151 | hypothetical protein PHAVU_011G104600g [Phaseolus vulgaris] |
| COG | YP_001868564.1 | 3.00E-34 | hypothetical protein Npun_F5300 [Nostoc punctiforme PCC 73102] |
| Swissprot | tr|Q3Y8L7|DAW1_CHLRE | 1.00E-23 | Dynein assembly factor with WDR repeat domains 1 |
| trEMBL | tr|V7AH09|V7AH09_PHAVU | 9.00E-152 | Uncharacterized protein {ECO:0000313|EMBL:ESW04550.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00613 | 105082 | 114956 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | DWD |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000613s00030319.1 | PF00400.27 | WD40 | 129 | 164 | 2.50E-07 |
| Glyur000613s00030319.1 | PF00400.27 | WD40 | 180 | 207 | 0.0011 |
| Glyur000613s00030319.1 | PF00400.27 | WD40 | 214 | 251 | 1.20E-07 |
| Glyur000613s00030319.1 | PF00400.27 | WD40 | 259 | 292 | 7.40E-09 |
| Glyur000613s00030319.1 | PF00400.27 | WD40 | 296 | 334 | 3.50E-08 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.019 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.074 |
| SRR1811619 | moderate drought stress | 0.031 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.106 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.205 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.000 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.013 |
| SRR2967015 | Control (Tissue:root) | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.000 |
| SRR9715740 | Leave | 0.037 |
| SRR9715741 | Leave | 0.000 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.121 |
| SRR9715743 | Root | 0.241 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.077 |
| SRR8749028 | MeJA induced 9h | 0.105 |
| SRR8749029 | MeJA induced 9h | 0.058 |
| SRR8749030 | Uninduced | 0.062 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.028 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.085 |
| SRR8400027 | Control-Root | 0.212 |