Gene detail information of Glyur000614s00017184.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G39450.1 | 2.00E-149 | F-box family protein |
| NR | XP_004502964.1 | 0 | PREDICTED: F-box protein At5g39450-like [Cicer arietinum] |
| Swissprot | tr|Q8RWD6|FB271_ARATH | 0 | F-box protein At5g39450 |
| trEMBL | tr|A0A072V194|A0A072V194_MEDTR | 0 | F-box plant protein, putative {ECO:0000313|EMBL:KEH35612.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00614 | 84 | 4156 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000614s00017184.1 | PF00646.28 | F-box | 26 | 67 | 9.90E-06 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 14.479 |
| SRR1783600 | control | 14.418 |
| SRR1783602 | moderate drought stress | 15.710 |
| SRR1811619 | moderate drought stress | 15.655 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 20.607 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 20.556 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 14.345 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 13.963 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 26.975 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 27.472 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 9.020 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 9.103 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 15.471 |
| SRR2868004 | Drought Stress(Tissue:root) | 16.238 |
| SRR2967015 | Control (Tissue:root) | 14.978 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 7.574 |
| SRR9715740 | Leave | 5.845 |
| SRR9715741 | Leave | 8.851 |
| SRR9715739 | Root | 41.561 |
| SRR9715742 | Root | 28.122 |
| SRR9715743 | Root | 31.071 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 10.710 |
| SRR8749028 | MeJA induced 9h | 15.883 |
| SRR8749029 | MeJA induced 9h | 12.041 |
| SRR8749030 | Uninduced | 10.524 |
| SRR8749031 | Uninduced | 9.103 |
| SRR8749032 | Uninduced | 13.816 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 18.883 |
| SRR8400027 | Control-Root | 22.124 |