Gene detail information of Glyur000614s00017188.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G09250.11.00E-32ssDNA-binding transcriptional regulator
NRAFK40203.15.59E-54unknown [Lotus japonicus]
Swissprottr|O65154|KIWI_ARATH6.00E-41RNA polymerase II transcriptional coactivator KIWI
trEMBLtr|I3SIW1|I3SIW1_LOTJA2.00E-54Uncharacterized protein {ECO:0000313|EMBL:AFK40203.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold006141875223767+


Gene family

Gene familysubfamily
Transcription Factors FamilyCoactivator p15


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

biological_process

GO:0006355  regulation of transcription, DNA-templated


molecular_function

GO:0003677  DNA binding

GO:0003713  transcription coactivator activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000614s00017188.1PF02229.11PC444971.90E-23


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control19.138
SRR1783600control19.294
SRR1783602moderate drought stress19.956
SRR1811619moderate drought stress19.492

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain41.294
DRR006520Root Summer glycyrrhizin high producing strain41.026
DRR006521Root Winter glycyrrhizin high producing strain34.914
DRR006522Root Winter glycyrrhizin high producing strain33.879
DRR006523Root Summer glycyrrhizin low producing strain35.348
DRR006524Root Summer glycyrrhizin low producing strain37.448
DRR006525Leaf Summer glycyrrhizin high producing strain19.378
DRR006526Leaf Summer glycyrrhizin high producing strain17.086

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)37.326
SRR2868004Drought Stress(Tissue:root)32.550
SRR2967015Control (Tissue:root)36.711

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave20.801
SRR9715740Leave25.714
SRR9715741Leave22.248
SRR9715739Root16.229
SRR9715742Root16.857
SRR9715743Root13.817

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h65.514
SRR8749028MeJA induced 9h26.145
SRR8749029MeJA induced 9h38.060
SRR8749030Uninduced13.180
SRR8749031Uninduced5.989
SRR8749032Uninduced7.468

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root48.447
SRR8400027Control-Root43.032

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved