Gene detail information of Glyur000614s00017207.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G63810.10beta-galactosidase 10
NRKHN09646.10Beta-galactosidase 3 [Glycine soja]
COGYP_003380010.12.00E-35beta-galactosidase [Kribbella flavida DSM 17836]
Swissprottr|Q9FN08|BGA10_ARATH0Beta-galactosidase 10 (Precursor)
trEMBLtr|V7AYS1|V7AYS1_PHAVU0Beta-galactosidase {ECO:0000256|RuleBase:RU000675}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00614112541135562-


Gene family

Gene familysubfamily
Carbohydrate-Active enzymes FamilyGH35


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

biological_process

GO:0005975  carbohydrate metabolic process


molecular_function

GO:0004553  hydrolase activity, hydrolyzing O-glycosyl compounds


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000614s00017207.1PF01301.14Glyco_hydro_35361512.60E-53
Glyur000614s00017207.1PF13364.1BetaGal_dom4_54195146.60E-08
Glyur000614s00017207.1PF01301.14Glyco_hydro_357028174.80E-46
Glyur000614s00017207.1PF01301.14Glyco_hydro_358189763.90E-46


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control7.372
SRR1783600control7.458
SRR1783602moderate drought stress4.469
SRR1811619moderate drought stress4.413

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain7.875
DRR006520Root Summer glycyrrhizin high producing strain8.185
DRR006521Root Winter glycyrrhizin high producing strain8.979
DRR006522Root Winter glycyrrhizin high producing strain8.796
DRR006523Root Summer glycyrrhizin low producing strain6.196
DRR006524Root Summer glycyrrhizin low producing strain6.481
DRR006525Leaf Summer glycyrrhizin high producing strain8.644
DRR006526Leaf Summer glycyrrhizin high producing strain8.440

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)16.295
SRR2868004Drought Stress(Tissue:root)12.602
SRR2967015Control (Tissue:root)13.985

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave8.361
SRR9715740Leave6.538
SRR9715741Leave7.424
SRR9715739Root2.852
SRR9715742Root10.274
SRR9715743Root8.513

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h11.471
SRR8749028MeJA induced 9h13.077
SRR8749029MeJA induced 9h8.734
SRR8749030Uninduced5.357
SRR8749031Uninduced4.701
SRR8749032Uninduced4.933

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root17.094
SRR8400027Control-Root19.428

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved