Gene detail information of Glyur000615s00024003.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G18100.13.00E-58copper/zinc superoxide dismutase 3
NRAES75166.21.53E-95superoxide dismutase [Cu-Zn] protein [Medicago truncatula]
COGYP_007200318.17.00E-30Cu/Zn superoxide dismutase [Singulisphaera acidiphila DSM 18658]
Swissprottr|O49044|SODC2_MESCR4.00E-80Superoxide dismutase [Cu-Zn] 2
trEMBLtr|G7KPK9|G7KPK9_MEDTR6.00E-96Superoxide dismutase [Cu-Zn] {ECO:0000256|RuleBase:RU000393}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold006152680630041-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K04565SOD1 EC:1.15.1.1 Peroxisome map04146
Longevity regulating pathway - multiple speciesmap04213
Amyotrophic lateral sclerosis (ALS)map05014
Huntington's diseasemap05016
Prion diseasesmap05020


Gene Ontology

biological_process

GO:0006801  superoxide metabolic process

GO:0055114  oxidation-reduction process


molecular_function

GO:0004784  superoxide dismutase activity

GO:0046872  metal ion binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000615s00024003.1PF00080.15Sod_Cu241691.50E-44


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control14.108
SRR1783600control14.270
SRR1783602moderate drought stress10.804
SRR1811619moderate drought stress11.004

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain17.478
DRR006520Root Summer glycyrrhizin high producing strain16.870
DRR006521Root Winter glycyrrhizin high producing strain9.787
DRR006522Root Winter glycyrrhizin high producing strain9.062
DRR006523Root Summer glycyrrhizin low producing strain10.228
DRR006524Root Summer glycyrrhizin low producing strain10.520
DRR006525Leaf Summer glycyrrhizin high producing strain37.503
DRR006526Leaf Summer glycyrrhizin high producing strain37.499

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)52.310
SRR2868004Drought Stress(Tissue:root)53.051
SRR2967015Control (Tissue:root)41.548

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave94.979
SRR9715740Leave161.367
SRR9715741Leave84.658
SRR9715739Root19.881
SRR9715742Root16.879
SRR9715743Root17.053

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h25.850
SRR8749028MeJA induced 9h29.022
SRR8749029MeJA induced 9h24.586
SRR8749030Uninduced23.015
SRR8749031Uninduced9.658
SRR8749032Uninduced15.644

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root51.612
SRR8400027Control-Root57.099

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved