Gene detail information of Glyur000615s00024014.1 |
Functional Annotation
Database | Orthologs | E value | Annotation |
---|---|---|---|
TAIR | AT5G27530.1 | 4.00E-30 | Pectin lyase-like superfamily protein |
NR | XP_004489698.1 | 3.37E-106 | PREDICTED: probable polygalacturonase At3g15720-like [Cicer arietinum] |
COG | YP_003391696.1 | 1.00E-08 | glycoside hydrolase family 28 [Spirosoma linguale DSM 74] |
Swissprot | tr|Q94AJ5|PGLR5_ARATH | 4.00E-23 | Probable polygalacturonase At1g80170 (Precursor) |
trEMBL | tr|I3SU12|I3SU12_MEDTR | 6.00E-94 | Uncharacterized protein {ECO:0000313|EMBL:AFK43754.1} |
Sequence
Transcript Sequence |
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Protein Sequence |
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Location information(JBrowse)
Scaffold | Start | End | Strand |
---|---|---|---|
Scaffold00615 | 75263 | 82040 | - |
Gene family
Gene family | subfamily |
---|---|
Carbohydrate-Active enzymes Family | GH28 |
KEGG pathway
KO | Enzyme | Enzyme ID | pathway | mapID |
---|---|---|---|---|
-- | -- | -- | -- | -- |
Gene Ontology
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Pfam domain
Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
---|---|---|---|---|---|
Glyur000615s00024014.1 | PF00295.12 | Glyco_hydro_28 | 160 | 254 | 1.40E-17 |
Expression pattern
SRA Experiment | Description | TPM |
---|---|---|
SRR1783599 | control | 0.000 |
SRR1783600 | control | 0.000 |
SRR1783602 | moderate drought stress | 0.000 |
SRR1811619 | moderate drought stress | 0.000 |
SRA Experiment | Description | TPM |
---|---|---|
DRR006519 | Root Summer glycyrrhizin high producing strain | 0.091 |
DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
SRA Experiment | Description | TPM |
---|---|---|
SRR2867873 | Salt Stress(Tissue:root) | 1.997 |
SRR2868004 | Drought Stress(Tissue:root) | 2.800 |
SRR2967015 | Control (Tissue:root) | 0.707 |
SRA Experiment | Description | TPM |
---|---|---|
SRR9715738 | Leave | 0.000 |
SRR9715740 | Leave | 0.000 |
SRR9715741 | Leave | 0.000 |
SRR9715739 | Root | 0.000 |
SRR9715742 | Root | 0.072 |
SRR9715743 | Root | 0.156 |
SRA Experiment | Description | TPM |
---|---|---|
SRR8749027 | MeJA induced 9h | 0.000 |
SRR8749028 | MeJA induced 9h | 0.000 |
SRR8749029 | MeJA induced 9h | 0.000 |
SRR8749030 | Uninduced | 0.000 |
SRR8749031 | Uninduced | 0.000 |
SRR8749032 | Uninduced | 0.000 |
SRA Experiment | Description | TPM |
---|---|---|
SRR8400026 | NaCl treatment-Root | 0.769 |
SRR8400027 | Control-Root | 1.712 |