Gene detail information of Glyur000616s00026610.1 |
Functional Annotation
Database | Orthologs | E value | Annotation |
---|---|---|---|
TAIR | AT5G53460.3 | 0 | NADH-dependent glutamate synthase 1 |
NR | KEH40309.1 | 0 | NADH glutamate synthase [Medicago truncatula] |
COG | YP_003368755.1 | 0 | glutamate synthase (NADH) [Pirellula staleyi DSM 6068] |
Swissprot | tr|Q03460|GLSN_MEDSA | 0 | Glutamate synthase [NADH], amyloplastic (Precursor) |
trEMBL | tr|A0A072VE66|A0A072VE66_MEDTR | 0 | NADH glutamate synthase {ECO:0000313|EMBL:KEH40309.1} |
Sequence
Transcript Sequence |
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Protein Sequence |
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Location information(JBrowse)
Scaffold | Start | End | Strand |
---|---|---|---|
Scaffold00616 | 122700 | 134625 | - |
Gene family
Gene family | subfamily |
---|---|
-- | -- |
KEGG pathway
KO | Enzyme | Enzyme ID | pathway | mapID |
---|---|---|---|---|
K00264 | GLT1 | EC:1.4.1.13 1.4.1.14 | Biosynthesis of amino acids | map01230 |
Nitrogen metabolism | map00910 | |||
Alanine, aspartate and glutamate metabolism | map00250 |
Gene Ontology
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Pfam domain
Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
---|---|---|---|---|---|
Glyur000616s00026610.1 | PF00310.16 | GATase_2 | 108 | 321 | 6.80E-67 |
Glyur000616s00026610.1 | PF00310.16 | GATase_2 | 335 | 506 | 1.40E-68 |
Glyur000616s00026610.1 | PF04898.9 | Glu_syn_central | 607 | 895 | 9.20E-120 |
Glyur000616s00026610.1 | PF01645.12 | Glu_synthase | 960 | 1331 | 4.40E-161 |
Glyur000616s00026610.1 | PF01493.14 | GXGXG | 1412 | 1601 | 2.20E-69 |
Glyur000616s00026610.1 | PF14691.1 | Fer4_20 | 1736 | 1844 | 1.70E-22 |
Glyur000616s00026610.1 | PF07992.9 | Pyr_redox_2 | 1858 | 2171 | 1.80E-17 |
Glyur000616s00026610.1 | PF00070.22 | Pyr_redox | 1858 | 1899 | 0.00013 |
Expression pattern
SRA Experiment | Description | TPM |
---|---|---|
SRR1783599 | control | 11.522 |
SRR1783600 | control | 11.513 |
SRR1783602 | moderate drought stress | 13.764 |
SRR1811619 | moderate drought stress | 13.730 |
SRA Experiment | Description | TPM |
---|---|---|
DRR006519 | Root Summer glycyrrhizin high producing strain | 12.860 |
DRR006520 | Root Summer glycyrrhizin high producing strain | 12.758 |
DRR006521 | Root Winter glycyrrhizin high producing strain | 39.770 |
DRR006522 | Root Winter glycyrrhizin high producing strain | 38.751 |
DRR006523 | Root Summer glycyrrhizin low producing strain | 19.376 |
DRR006524 | Root Summer glycyrrhizin low producing strain | 19.420 |
DRR006525 | Leaf Summer glycyrrhizin high producing strain | 13.885 |
DRR006526 | Leaf Summer glycyrrhizin high producing strain | 14.003 |
SRA Experiment | Description | TPM |
---|---|---|
SRR2867873 | Salt Stress(Tissue:root) | 113.319 |
SRR2868004 | Drought Stress(Tissue:root) | 97.003 |
SRR2967015 | Control (Tissue:root) | 105.364 |
SRA Experiment | Description | TPM |
---|---|---|
SRR9715738 | Leave | 18.055 |
SRR9715740 | Leave | 16.177 |
SRR9715741 | Leave | 12.840 |
SRR9715739 | Root | 11.058 |
SRR9715742 | Root | 81.743 |
SRR9715743 | Root | 68.705 |
SRA Experiment | Description | TPM |
---|---|---|
SRR8749027 | MeJA induced 9h | 137.118 |
SRR8749028 | MeJA induced 9h | 330.400 |
SRR8749029 | MeJA induced 9h | 296.756 |
SRR8749030 | Uninduced | 288.885 |
SRR8749031 | Uninduced | 232.628 |
SRR8749032 | Uninduced | 355.359 |
SRA Experiment | Description | TPM |
---|---|---|
SRR8400026 | NaCl treatment-Root | 86.220 |
SRR8400027 | Control-Root | 42.604 |