Gene detail information of Glyur000616s00026610.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G53460.30NADH-dependent glutamate synthase 1
NRKEH40309.10NADH glutamate synthase [Medicago truncatula]
COGYP_003368755.10glutamate synthase (NADH) [Pirellula staleyi DSM 6068]
Swissprottr|Q03460|GLSN_MEDSA0Glutamate synthase [NADH], amyloplastic (Precursor)
trEMBLtr|A0A072VE66|A0A072VE66_MEDTR0NADH glutamate synthase {ECO:0000313|EMBL:KEH40309.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00616122700134625-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00264GLT1 EC:1.4.1.13 1.4.1.14 Biosynthesis of amino acids map01230
Nitrogen metabolismmap00910
Alanine, aspartate and glutamate metabolismmap00250


Gene Ontology

biological_process

GO:0006537  glutamate biosynthetic process

GO:0006807  nitrogen compound metabolic process

GO:0008152  metabolic process

GO:0055114  oxidation-reduction process


molecular_function

GO:0003824  catalytic activity

GO:0005506  iron ion binding

GO:0010181  FMN binding

GO:0015930  glutamate synthase activity

GO:0016040  glutamate synthase (NADH) activity

GO:0016491  oxidoreductase activity

GO:0016638  oxidoreductase activity, acting on the CH-NH2 group of donors

GO:0016639  oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor

GO:0045181  glutamate synthase activity, NAD(P)H as acceptor

GO:0050660  flavin adenine dinucleotide binding

GO:0051536  iron-sulfur cluster binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000616s00026610.1PF00310.16GATase_21083216.80E-67
Glyur000616s00026610.1PF00310.16GATase_23355061.40E-68
Glyur000616s00026610.1PF04898.9Glu_syn_central6078959.20E-120
Glyur000616s00026610.1PF01645.12Glu_synthase96013314.40E-161
Glyur000616s00026610.1PF01493.14GXGXG141216012.20E-69
Glyur000616s00026610.1PF14691.1Fer4_20173618441.70E-22
Glyur000616s00026610.1PF07992.9Pyr_redox_2185821711.80E-17
Glyur000616s00026610.1PF00070.22Pyr_redox185818990.00013


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control11.522
SRR1783600control11.513
SRR1783602moderate drought stress13.764
SRR1811619moderate drought stress13.730

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain12.860
DRR006520Root Summer glycyrrhizin high producing strain12.758
DRR006521Root Winter glycyrrhizin high producing strain39.770
DRR006522Root Winter glycyrrhizin high producing strain38.751
DRR006523Root Summer glycyrrhizin low producing strain19.376
DRR006524Root Summer glycyrrhizin low producing strain19.420
DRR006525Leaf Summer glycyrrhizin high producing strain13.885
DRR006526Leaf Summer glycyrrhizin high producing strain14.003

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)113.319
SRR2868004Drought Stress(Tissue:root)97.003
SRR2967015Control (Tissue:root)105.364

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave18.055
SRR9715740Leave16.177
SRR9715741Leave12.840
SRR9715739Root11.058
SRR9715742Root81.743
SRR9715743Root68.705

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h137.118
SRR8749028MeJA induced 9h330.400
SRR8749029MeJA induced 9h296.756
SRR8749030Uninduced288.885
SRR8749031Uninduced232.628
SRR8749032Uninduced355.359

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root86.220
SRR8400027Control-Root42.604