Gene detail information of Glyur000617s00023872.2


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G66730.10DNA LIGASE 6
NRXP_004493055.10PREDICTED: DNA ligase 1-like, partial [Cicer arietinum]
COGYP_023450.12.00E-67ATP-dependent DNA ligase [Picrophilus torridus DSM 9790]
Swissprottr|Q42572|DNLI1_ARATH2.00E-125DNA ligase 1 (Precursor)
trEMBLtr|K7MVF2|K7MVF2_SOYBN0DNA ligase {ECO:0000256|RuleBase:RU000617}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold006173466648059+


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K10747LIG1 EC:6.5.1.1 6.5.1.6 6.5.1.7 DNA replication map03030
Base excision repairmap03410
Nucleotide excision repairmap03420
Mismatch repairmap03430


Gene Ontology

biological_process

GO:0006281  DNA repair

GO:0006310  DNA recombination

GO:0051103  DNA ligation involved in DNA repair


molecular_function

GO:0003677  DNA binding

GO:0003909  DNA ligase activity

GO:0003910  DNA ligase (ATP) activity

GO:0005524  ATP binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000617s00023872.2PF07522.9DRMBL2683718.40E-19
Glyur000617s00023872.2PF04675.9DNA_ligase_A_N7809073.00E-23
Glyur000617s00023872.2PF01068.16DNA_ligase_A_M106913071.20E-32
Glyur000617s00023872.2PF04679.10DNA_ligase_A_C133314417.10E-16


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control6.390
SRR1783600control6.205
SRR1783602moderate drought stress7.377
SRR1811619moderate drought stress7.367

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain8.410
DRR006520Root Summer glycyrrhizin high producing strain8.135
DRR006521Root Winter glycyrrhizin high producing strain8.653
DRR006522Root Winter glycyrrhizin high producing strain8.336
DRR006523Root Summer glycyrrhizin low producing strain5.740
DRR006524Root Summer glycyrrhizin low producing strain5.615
DRR006525Leaf Summer glycyrrhizin high producing strain4.489
DRR006526Leaf Summer glycyrrhizin high producing strain4.519

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)13.520
SRR2868004Drought Stress(Tissue:root)17.918
SRR2967015Control (Tissue:root)18.946

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave3.596
SRR9715740Leave4.656
SRR9715741Leave4.854
SRR9715739Root1.426
SRR9715742Root5.835
SRR9715743Root5.089

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h10.183
SRR8749028MeJA induced 9h18.387
SRR8749029MeJA induced 9h7.460
SRR8749030Uninduced7.852
SRR8749031Uninduced8.852
SRR8749032Uninduced7.405

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root14.519
SRR8400027Control-Root14.533