Gene detail information of Glyur000617s00023882.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G66670.13.00E-108CLP protease proteolytic subunit 3
NRXP_003518640.10PREDICTED: ATP-dependent Clp protease proteolytic subunit 3, chloroplastic-like [Glycine max]
COGYP_007126209.11.00E-75ATP-dependent Clp protease proteolytic subunit ClpP [Gloeocapsa sp. PCC 7428]
Swissprottr|Q9SXJ6|CLPP3_ARATH2.00E-140ATP-dependent Clp protease proteolytic subunit 3, chloroplastic (Precursor)
trEMBLtr|I1JDN1|I1JDN1_SOYBN0ATP-dependent Clp protease proteolytic subunit {ECO:0000256|RuleBase:RU003567}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00617119505123262+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01358clpP, CLPP EC:3.4.21.92 Cell cycle - Caulobacter map04112
Longevity regulating pathway - wormmap04212


Gene Ontology

biological_process

GO:0006508  proteolysis


molecular_function

GO:0004252  serine-type endopeptidase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000617s00023882.1PF00574.18CLP_protease872601.50E-71


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control45.398
SRR1783600control45.340
SRR1783602moderate drought stress39.975
SRR1811619moderate drought stress39.461

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain39.513
DRR006520Root Summer glycyrrhizin high producing strain39.629
DRR006521Root Winter glycyrrhizin high producing strain37.164
DRR006522Root Winter glycyrrhizin high producing strain36.514
DRR006523Root Summer glycyrrhizin low producing strain31.816
DRR006524Root Summer glycyrrhizin low producing strain31.927
DRR006525Leaf Summer glycyrrhizin high producing strain78.778
DRR006526Leaf Summer glycyrrhizin high producing strain78.171

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)55.948
SRR2868004Drought Stress(Tissue:root)56.155
SRR2967015Control (Tissue:root)49.261

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave75.506
SRR9715740Leave87.165
SRR9715741Leave74.996
SRR9715739Root18.496
SRR9715742Root24.298
SRR9715743Root24.106

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h53.650
SRR8749028MeJA induced 9h44.713
SRR8749029MeJA induced 9h35.835
SRR8749030Uninduced47.470
SRR8749031Uninduced26.441
SRR8749032Uninduced20.592

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root58.250
SRR8400027Control-Root56.466

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved