Gene detail information of Glyur000618s00030213.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G28920.1 | 1.00E-48 | homeobox protein 34 |
| NR | XP_004491795.1 | 2.22E-122 | PREDICTED: transcription factor HB29-like [Cicer arietinum] |
| Swissprot | tr|Q9LXG0|ZHD8_ARATH | 9.00E-72 | Zinc-finger homeodomain protein 8 |
| trEMBL | tr|A2Q1B8|A2Q1B8_MEDTR | 6.00E-112 | Homeobox domain, ZF-HD class; ZF-HD homeobox protein Cys/His-rich dimerisation region; Homeodomain-like {ECO:0000313|EMBL:ABN05735.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00618 | 47332 | 48357 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | zf-HD |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000618s00030213.1 | PF04770.7 | ZF-HD_dimer | 77 | 134 | 5.00E-32 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 18.433 |
| SRR1783600 | control | 18.332 |
| SRR1783602 | moderate drought stress | 36.614 |
| SRR1811619 | moderate drought stress | 36.214 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 58.653 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 59.067 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 65.251 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 63.132 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 55.921 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 59.460 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 79.128 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 78.401 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 5.165 |
| SRR2868004 | Drought Stress(Tissue:root) | 3.817 |
| SRR2967015 | Control (Tissue:root) | 6.922 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 92.000 |
| SRR9715740 | Leave | 111.888 |
| SRR9715741 | Leave | 85.206 |
| SRR9715739 | Root | 11.374 |
| SRR9715742 | Root | 31.957 |
| SRR9715743 | Root | 26.854 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 13.583 |
| SRR8749028 | MeJA induced 9h | 21.535 |
| SRR8749029 | MeJA induced 9h | 22.673 |
| SRR8749030 | Uninduced | 8.993 |
| SRR8749031 | Uninduced | 5.841 |
| SRR8749032 | Uninduced | 11.004 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 9.789 |
| SRR8400027 | Control-Root | 14.692 |