Gene detail information of Glyur000618s00030214.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G28910.1 | 3.00E-79 | myb domain protein 30 |
| NR | ABD32205.1 | 4.47E-149 | Homeodomain-related [Medicago truncatula] |
| Swissprot | tr|P81392|MYB06_ANTMA | 3.00E-98 | Myb-related protein 306 |
| trEMBL | tr|Q2HVT2|Q2HVT2_MEDTR | 2.00E-149 | R2R3-myb transcription factor {ECO:0000313|EMBL:AES77404.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00618 | 73878 | 75453 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | MYB |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000618s00030214.1 | PF00249.26 | Myb_DNA-binding | 14 | 61 | 3.10E-15 |
| Glyur000618s00030214.1 | PF00249.26 | Myb_DNA-binding | 67 | 112 | 4.50E-13 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.875 |
| SRR1811619 | moderate drought stress | 0.922 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.717 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.488 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.279 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.220 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.106 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.108 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 12.664 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 11.422 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.555 |
| SRR2868004 | Drought Stress(Tissue:root) | 1.049 |
| SRR2967015 | Control (Tissue:root) | 2.776 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 85.637 |
| SRR9715740 | Leave | 49.472 |
| SRR9715741 | Leave | 91.489 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.491 |
| SRR9715743 | Root | 0.363 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 44.565 |
| SRR8749028 | MeJA induced 9h | 28.868 |
| SRR8749029 | MeJA induced 9h | 24.217 |
| SRR8749030 | Uninduced | 40.490 |
| SRR8749031 | Uninduced | 4.286 |
| SRR8749032 | Uninduced | 9.489 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.379 |
| SRR8400027 | Control-Root | 1.385 |