Gene detail information of Glyur000618s00030224.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G15150.1 | 9.00E-48 | homeobox 3 |
| NR | XP_007139587.1 | 9.90E-103 | hypothetical protein PHAVU_008G042200g [Phaseolus vulgaris] |
| Swissprot | tr|Q8LC03|ATB13_ARATH | 2.00E-67 | Homeobox-leucine zipper protein ATHB-13 |
| trEMBL | tr|V7B542|V7B542_PHAVU | 4.00E-103 | Uncharacterized protein {ECO:0000313|EMBL:ESW11581.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00618 | 134295 | 136367 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | HB |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000618s00030224.1 | PF00046.24 | Homeobox | 40 | 92 | 6.90E-16 |
| Glyur000618s00030224.1 | PF02183.13 | HALZ | 94 | 133 | 5.90E-13 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.403 |
| SRR1783600 | control | 4.830 |
| SRR1783602 | moderate drought stress | 8.648 |
| SRR1811619 | moderate drought stress | 8.933 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.302 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.238 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.278 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.188 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.308 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.307 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.299 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.097 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 11.130 |
| SRR2868004 | Drought Stress(Tissue:root) | 6.162 |
| SRR2967015 | Control (Tissue:root) | 10.907 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 2.024 |
| SRR9715740 | Leave | 1.771 |
| SRR9715741 | Leave | 1.580 |
| SRR9715739 | Root | 0.712 |
| SRR9715742 | Root | 3.482 |
| SRR9715743 | Root | 1.311 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.003 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 4.051 |
| SRR8400027 | Control-Root | 4.979 |