Gene detail information of Glyur000620s00017794.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G04842.10threonyl-tRNA synthetase, putative / threonine--tRNA ligase, putative
NRAES71826.20threonyl-tRNA synthetase/threonine-tRNA ligase, putative [Medicago truncatula]
COGYP_007055352.10threonyl-tRNA synthetase [Rivularia sp. PCC 7116]
Swissprottr|O04630|SYTM_ARATH1.00E-123Threonine--tRNA ligase, mitochondrial (Precursor)
trEMBLtr|G7J9I7|G7J9I7_MEDTR0Threonyl-tRNA synthetase/threonine-tRNA ligase, putative {ECO:0000313|EMBL:AES71826.2}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold006206458969977-


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01868TARS, thrS EC:6.1.1.3 Aminoacyl-tRNA biosynthesis map00970


Gene Ontology

biological_process

GO:0006418  tRNA aminoacylation for protein translation

GO:0006435  threonyl-tRNA aminoacylation

GO:0043039  tRNA aminoacylation


cellular_component

GO:0005737  cytoplasm


molecular_function

GO:0000166  nucleotide binding

GO:0004812  aminoacyl-tRNA ligase activity

GO:0004829  threonine-tRNA ligase activity

GO:0005524  ATP binding

GO:0016876  ligase activity, forming aminoacyl-tRNA and related compounds

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000620s00017794.1PF07973.9tRNA_SAD1862381.90E-12
Glyur000620s00017794.1PF00587.20tRNA-synt_2b2944572.30E-45
Glyur000620s00017794.1PF03129.15HGTP_anticodon5456321.90E-17


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control4.452
SRR1783600control4.632
SRR1783602moderate drought stress4.916
SRR1811619moderate drought stress4.944

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain6.067
DRR006520Root Summer glycyrrhizin high producing strain6.118
DRR006521Root Winter glycyrrhizin high producing strain8.427
DRR006522Root Winter glycyrrhizin high producing strain8.487
DRR006523Root Summer glycyrrhizin low producing strain8.093
DRR006524Root Summer glycyrrhizin low producing strain8.079
DRR006525Leaf Summer glycyrrhizin high producing strain61.681
DRR006526Leaf Summer glycyrrhizin high producing strain60.586

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)13.400
SRR2868004Drought Stress(Tissue:root)18.606
SRR2967015Control (Tissue:root)22.268

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave42.305
SRR9715740Leave77.285
SRR9715741Leave47.538
SRR9715739Root0.876
SRR9715742Root3.961
SRR9715743Root3.336

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h9.329
SRR8749028MeJA induced 9h17.055
SRR8749029MeJA induced 9h8.793
SRR8749030Uninduced12.920
SRR8749031Uninduced9.228
SRR8749032Uninduced6.360

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root13.453
SRR8400027Control-Root11.840

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved