Gene detail information of Glyur000620s00017796.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G07800.11.00E-90Thymidine kinase
NRXP_003601580.11.33E-132Thymidine kinase [Medicago truncatula]
COGNP_560021.17.00E-30thymidine kinase [Pyrobaculum aerophilum str. IM2]
Swissprottr|O81263|KITH_ORYSJ2.00E-108Thymidine kinase
trEMBLtr|G7J9J2|G7J9J2_MEDTR5.00E-133Thymidine kinase {ECO:0000256|RuleBase:RU000544}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold006207885680138+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00857tdk, TK EC:2.7.1.21 Pyrimidine metabolism map00240
Drug metabolism - other enzymesmap00983


Gene Ontology

molecular_function

GO:0004797  thymidine kinase activity

GO:0005524  ATP binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000620s00017796.1PF00265.13TK272042.70E-54


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control5.374
SRR1783600control5.313
SRR1783602moderate drought stress2.902
SRR1811619moderate drought stress2.926

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain8.722
DRR006520Root Summer glycyrrhizin high producing strain8.983
DRR006521Root Winter glycyrrhizin high producing strain0.000
DRR006522Root Winter glycyrrhizin high producing strain0.000
DRR006523Root Summer glycyrrhizin low producing strain3.424
DRR006524Root Summer glycyrrhizin low producing strain3.797
DRR006525Leaf Summer glycyrrhizin high producing strain1.069
DRR006526Leaf Summer glycyrrhizin high producing strain1.064

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)35.933
SRR2868004Drought Stress(Tissue:root)14.967
SRR2967015Control (Tissue:root)16.933

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave5.836
SRR9715740Leave0.229
SRR9715741Leave0.974
SRR9715739Root15.528
SRR9715742Root4.324
SRR9715743Root5.357

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h23.179
SRR8749028MeJA induced 9h11.722
SRR8749029MeJA induced 9h9.946
SRR8749030Uninduced0.548
SRR8749031Uninduced0.394
SRR8749032Uninduced0.574

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root34.177
SRR8400027Control-Root22.291

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved