Gene detail information of Glyur000620s00017805.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G55570.1 | 0 | SKU5 similar 12 |
| NR | XP_004502172.1 | 0 | PREDICTED: L-ascorbate oxidase homolog [Cicer arietinum] |
| COG | NP_215361.1 | 3.00E-20 | Probable oxidase [Mycobacterium tuberculosis H37Rv] |
| Swissprot | tr|Q00624|ASOL_BRANA | 0 | L-ascorbate oxidase homolog (Precursor) |
| trEMBL | tr|G7J9L2|G7J9L2_MEDTR | 0 | L-ascorbate oxidase-like protein {ECO:0000313|EMBL:AES71851.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00620 | 122120 | 131049 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K00423 | E1.10.3.3 | EC:1.10.3.3 | Ascorbate and aldarate metabolism | map00053 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000620s00017805.1 | PF07732.10 | Cu-oxidase_3 | 30 | 142 | 1.10E-37 |
| Glyur000620s00017805.1 | PF00394.17 | Cu-oxidase | 157 | 286 | 1.70E-36 |
| Glyur000620s00017805.1 | PF07731.9 | Cu-oxidase_2 | 396 | 521 | 5.10E-20 |
| Glyur000620s00017805.1 | PF00394.17 | Cu-oxidase | 661 | 803 | 1.30E-39 |
| Glyur000620s00017805.1 | PF07731.9 | Cu-oxidase_2 | 924 | 990 | 3.70E-11 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.277 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.084 |
| SRR2967015 | Control (Tissue:root) | 0.061 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.001 |
| SRR9715740 | Leave | 0.014 |
| SRR9715741 | Leave | 0.012 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.001 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.093 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.037 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.000 |
| SRR8400027 | Control-Root | 0.000 |