Gene detail information of Glyur000623s00024140.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G53850.22.00E-166haloacid dehalogenase-like hydrolase family protein
NRXP_004488728.10PREDICTED: probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1-like [Cicer arietinum]
COGYP_003268638.15.00E-54methylthioribulose-1-phosphate dehydratase [Haliangium ochraceum DSM 14365]
Swissprottr|B9N1F9|MTBC_POPTR0Enolase-phosphatase E1 {ECO:0000255|HAMAP-Rule:MF_03118}
trEMBLtr|I1LV18|I1LV18_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA12G35390.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00623102148107738-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K16054DEP1 EC:4.2.1.109 3.1.3.77 Cysteine and methionine metabolism map00270


Gene Ontology

biological_process

GO:0019509  L-methionine biosynthetic process from methylthioadenosine


cellular_component

GO:0005737  cytoplasm


molecular_function

GO:0046872  metal ion binding

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000623s00024140.1PF00596.16Aldolase_II11612.90E-20
Glyur000623s00024140.1PF13419.1HAD_22123458.60E-05


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control109.390
SRR1783600control109.652
SRR1783602moderate drought stress162.926
SRR1811619moderate drought stress160.234

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain167.091
DRR006520Root Summer glycyrrhizin high producing strain162.599
DRR006521Root Winter glycyrrhizin high producing strain83.989
DRR006522Root Winter glycyrrhizin high producing strain79.516
DRR006523Root Summer glycyrrhizin low producing strain156.801
DRR006524Root Summer glycyrrhizin low producing strain150.760
DRR006525Leaf Summer glycyrrhizin high producing strain95.718
DRR006526Leaf Summer glycyrrhizin high producing strain94.098

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)79.890
SRR2868004Drought Stress(Tissue:root)78.926
SRR2967015Control (Tissue:root)81.092

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave82.368
SRR9715740Leave82.359
SRR9715741Leave106.022
SRR9715739Root55.391
SRR9715742Root114.533
SRR9715743Root111.087

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h86.782
SRR8749028MeJA induced 9h128.966
SRR8749029MeJA induced 9h88.442
SRR8749030Uninduced114.218
SRR8749031Uninduced80.758
SRR8749032Uninduced72.664

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root124.711
SRR8400027Control-Root108.731

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved