Gene detail information of Glyur000623s00024142.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G20480.18.00E-127tetraacyldisaccharide 4'-kinase family protein
NRXP_007146497.10hypothetical protein PHAVU_006G045700g [Phaseolus vulgaris]
COGYP_003828737.19.00E-37tetraacyldisaccharide 4'-kinase [Acetohalobium arabaticum DSM 5501]
Swissprottr|Q8LEA0|LPXK_ARATH3.00E-156Probable tetraacyldisaccharide 4'-kinase, mitochondrial (Precursor)
trEMBLtr|V7BPI3|V7BPI3_PHAVU0Uncharacterized protein {ECO:0000313|EMBL:ESW18491.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00623119186121999+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00912lpxK EC:2.7.1.130 Lipopolysaccharide biosynthesis map00540


Gene Ontology

biological_process

GO:0009245  lipid A biosynthetic process


molecular_function

GO:0005524  ATP binding

GO:0009029  tetraacyldisaccharide 4'-kinase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000623s00024142.1PF02606.9LpxK283888.90E-70


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control3.257
SRR1783600control3.202
SRR1783602moderate drought stress3.534
SRR1811619moderate drought stress3.480

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain3.338
DRR006520Root Summer glycyrrhizin high producing strain3.380
DRR006521Root Winter glycyrrhizin high producing strain4.985
DRR006522Root Winter glycyrrhizin high producing strain5.038
DRR006523Root Summer glycyrrhizin low producing strain2.606
DRR006524Root Summer glycyrrhizin low producing strain2.917
DRR006525Leaf Summer glycyrrhizin high producing strain2.072
DRR006526Leaf Summer glycyrrhizin high producing strain2.125

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)7.218
SRR2868004Drought Stress(Tissue:root)5.309
SRR2967015Control (Tissue:root)5.184

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave2.268
SRR9715740Leave5.297
SRR9715741Leave2.791
SRR9715739Root1.493
SRR9715742Root1.534
SRR9715743Root1.094

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h11.080
SRR8749028MeJA induced 9h12.522
SRR8749029MeJA induced 9h6.959
SRR8749030Uninduced5.990
SRR8749031Uninduced0.638
SRR8749032Uninduced2.330

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root7.763
SRR8400027Control-Root7.071

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved