Gene detail information of Glyur000624s00026886.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G05200.19.00E-45RING/U-box superfamily protein
NRXP_004515703.15.43E-134PREDICTED: E3 ubiquitin-protein ligase ATL6-like [Cicer arietinum]
Swissprottr|Q8RXX9|ATL6_ARATH6.00E-57E3 ubiquitin-protein ligase ATL6 (Precursor)
trEMBLtr|G7KLK7|G7KLK7_MEDTR6.00E-132Zinc finger, C3HC4 type (RING finger) protein {ECO:0000313|EMBL:AES75676.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold006249850299684-


Gene family

Gene familysubfamily
Ubiquitin FamilyRING


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0005515  protein binding

GO:0008270  zinc ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000624s00026886.1PF13639.1zf-RING_21271701.10E-15


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control62.587
SRR1783600control63.136
SRR1783602moderate drought stress76.120
SRR1811619moderate drought stress75.340

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain113.659
DRR006520Root Summer glycyrrhizin high producing strain114.393
DRR006521Root Winter glycyrrhizin high producing strain45.759
DRR006522Root Winter glycyrrhizin high producing strain45.468
DRR006523Root Summer glycyrrhizin low producing strain52.730
DRR006524Root Summer glycyrrhizin low producing strain54.632
DRR006525Leaf Summer glycyrrhizin high producing strain8.979
DRR006526Leaf Summer glycyrrhizin high producing strain8.211

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)22.964
SRR2868004Drought Stress(Tissue:root)26.685
SRR2967015Control (Tissue:root)45.477

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave2.148
SRR9715740Leave8.204
SRR9715741Leave6.517
SRR9715739Root7.791
SRR9715742Root18.812
SRR9715743Root16.176

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h60.990
SRR8749028MeJA induced 9h111.413
SRR8749029MeJA induced 9h84.380
SRR8749030Uninduced5.329
SRR8749031Uninduced4.276
SRR8749032Uninduced4.478

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root23.498
SRR8400027Control-Root22.258

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved