Gene detail information of Glyur000625s00022688.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G06010.1 | 0 | Homeotic gene regulator |
| NR | XP_004496764.1 | 0 | PREDICTED: transcription regulatory protein SNF2-like isoform X2 [Cicer arietinum] |
| COG | YP_007297659.1 | 2.00E-81 | DNA/RNA helicase, superfamily II, SNF2 family [Thermoanaerobacterium thermosaccharolyticum M0795] |
| Swissprot | tr|F4J9M5|CHR12_ARATH | 0 | Probable ATP-dependent DNA helicase CHR12 |
| trEMBL | tr|I1NGB6|I1NGB6_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA20G28120.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00625 | 47035 | 54960 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | SNF2 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000625s00022688.1 | PF00176.18 | SNF2_N | 388 | 677 | 2.30E-75 |
| Glyur000625s00022688.1 | PF00271.26 | Helicase_C | 730 | 809 | 5.50E-16 |
| Glyur000625s00022688.1 | PF14619.1 | SnAC | 902 | 962 | 4.90E-15 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.676 |
| SRR1783600 | control | 3.693 |
| SRR1783602 | moderate drought stress | 3.901 |
| SRR1811619 | moderate drought stress | 3.990 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.487 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.466 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.541 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.450 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.501 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.523 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.060 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.033 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 8.875 |
| SRR2868004 | Drought Stress(Tissue:root) | 9.884 |
| SRR2967015 | Control (Tissue:root) | 10.565 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 3.924 |
| SRR9715740 | Leave | 3.895 |
| SRR9715741 | Leave | 4.083 |
| SRR9715739 | Root | 0.316 |
| SRR9715742 | Root | 2.297 |
| SRR9715743 | Root | 1.842 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 7.441 |
| SRR8749028 | MeJA induced 9h | 9.610 |
| SRR8749029 | MeJA induced 9h | 4.974 |
| SRR8749030 | Uninduced | 9.236 |
| SRR8749031 | Uninduced | 9.723 |
| SRR8749032 | Uninduced | 6.751 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 7.908 |
| SRR8400027 | Control-Root | 6.302 |