Gene detail information of Glyur000626s00022213.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G07050.1 | 2.00E-32 | CCT motif family protein |
| NR | XP_003544900.2 | 3.56E-94 | PREDICTED: protein CHLOROPLAST IMPORT APPARATUS 2-like isoform X1 [Glycine max] |
| Swissprot | tr|Q9LU68|CIA2_ARATH | 5.00E-23 | Protein CHLOROPLAST IMPORT APPARATUS 2 (Precursor) |
| trEMBL | tr|K7M839|K7M839_SOYBN | 1.00E-94 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA14G37721.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00626 | 69794 | 71048 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | Orphans |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000626s00022213.1 | PF06203.9 | CCT | 181 | 223 | 6.30E-21 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.119 |
| SRR1783600 | control | 0.099 |
| SRR1783602 | moderate drought stress | 1.204 |
| SRR1811619 | moderate drought stress | 1.242 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.762 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.853 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.064 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.029 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.042 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.934 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 31.975 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 31.324 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.052 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.000 |
| SRR2967015 | Control (Tissue:root) | 0.832 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.123 |
| SRR9715740 | Leave | 0.091 |
| SRR9715741 | Leave | 0.385 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.076 |
| SRR9715743 | Root | 0.011 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.253 |
| SRR8749028 | MeJA induced 9h | 0.544 |
| SRR8749029 | MeJA induced 9h | 0.413 |
| SRR8749030 | Uninduced | 0.068 |
| SRR8749031 | Uninduced | 0.276 |
| SRR8749032 | Uninduced | 0.066 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.084 |
| SRR8400027 | Control-Root | 0.166 |