Gene detail

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Gene detail information of Glyur000629s00020920.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G54320.3	4.00E-73	Integrase-type DNA-binding superfamily protein
NR	KHN38126.1	1.53E-174	Ethylene-responsive transcription factor WRI1 [Glycine soja]
Swissprot	tr\|Q6X5Y6\|WRI1_ARATH	7.00E-96	Ethylene-responsive transcription factor WRI1
trEMBL	tr\|I1KVX7\|I1KVX7_SOYBN	1.00E-172	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA08G24420.1}

Sequence

Transcript Sequence

>Glyur000629s00020920.1
ATGGTACATTCTCCACCAGCTTCTTGTTCATCACCATCTTCTTCTGTTGGGTTTGAGGAAGCTCCCAAAAGAAGGGGTAGTAATAGTAATAGTAATAGTAATAATAAGCAGCAGAAGCAGCAGCATAATCCAAGAAGGAATCTGATAAAGTCACAGAAGAATTGCAAGCAGAACCAATCAACCACCACCACTGGCAGAAGAAGCTCCATTTACAGAGGAGTTACAAGGTTTAATTTGTTTGAAGCTCACCTATGGGATAAGAGTNCTTGGAACAACATTCAGAACAAGAAGGGACGACAAGGGGCATATGATACTGAAGAAGCAGCAGCTCATACCTATGATCTTGCAGCCCTTAAGTATTGGGGGAAGGATGCTACCTTGAATTTCCCGATAGAAACATATGTGAAGGACATTGAGGAAATGGACAAGGCCTCGAAAGAAGAATACTTGGCTTCTTTGCGGCGCCAAAGCAGCGGTTTCTCTAGGGGCATTTCTAAATATCGTGGGGTAGCCAGGCATCATCATAATGGCCGCTGGGAAGCTCGGATTGGAAGAGTATGTGGTAACAAGTACCTCTACTTGGGTACATACAAAACTCAAGAGGAGGCAGCTGTAGCATATGATATGGCAGCAATAGAGTACAGAGGACTTAGTGCAGTGACCAATTTTGACATAAGCAACTACATTGACAAAATAAAAAAGAAAGATGATGATGATGATGAATCTCCTCAACAAACAGAAGCACAAATAGAAACAACTCCTAATTCCCCTCCTGACTCTGAAGAGACAGAAGAAGAGACGACAACACCATCCCCACCTGAGAATCTTCACATGCAACAACCNCAGCAACAGCACCGAGTTCAAAACACTGATCATGTTTCTCCAAGTGAGGAATCTTCACTAGTCACTGTCATGGACCATGTTCTTGAGCAGGACTTACCATGGAGCTTCATGTACACTACTGGTGGGTTACCACNGTTTCAACAAGACCCAGATTTGGATCTGAGCCAAGCTGAGGACTTTATGAGCATGTTTGATGGTGCTGGGTTTGAGGAGGACATTGATTTTCTGTTCAGCACAGAACCTGGTGGTGGTGGTGGGAGTTGTGATATCAATATCAGTGCAGTTTTGGATAGCATTGACTGTGTAGAGACAAATGAGGGTGTAGGTGGAAGCATGGTGGTGGATAATAACAACAAGCAGAAGCAGCAGCAGCAGCAGCTATTGAATTCCTTGGATGCTTCTTCACCATCATCTACAACAACTACAGTTTCTTGTAATTATTCTCTATGA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00629	25879	29892	+

Gene family

Gene family	subfamily
Transcription Factors Family	AP2

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

molecular_function GO:0003677 DNA binding GO:0003700 transcription factor activity, sequence-specific DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000629s00020920.1	PF00847.15	AP2	69	122	0.00011
Glyur000629s00020920.1	PF00847.15	AP2	165	216	1.30E-13

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.000
SRR1783600	control	0.026
SRR1783602	moderate drought stress	0.054
SRR1811619	moderate drought stress	0.027

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.000
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.000

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	0.200
SRR2868004	Drought Stress(Tissue:root)	0.108
SRR2967015	Control (Tissue:root)	0.084

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	0.000
SRR9715740	Leave	0.000
SRR9715741	Leave	0.000
SRR9715739	Root	0.000
SRR9715742	Root	0.000
SRR9715743	Root	0.020

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	0.029
SRR8400027	Control-Root	0.023