Gene detail information of Glyur000629s00020928.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G27110.2 | 0 | FAR1-related sequence 3 |
| NR | XP_003530369.1 | 0 | PREDICTED: protein FAR1-RELATED SEQUENCE 3-like isoform X1 [Glycine max] |
| Swissprot | tr|Q9ZVC9|FRS3_ARATH | 0 | Protein FAR1-RELATED SEQUENCE 3 |
| trEMBL | tr|K7L884|K7L884_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA08G24400.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00629 | 49891 | 54423 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | FAR1 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000629s00020928.1 | PF03101.10 | FAR1 | 64 | 138 | 2.50E-13 |
| Glyur000629s00020928.1 | PF10551.4 | MULE | 268 | 355 | 9.60E-26 |
| Glyur000629s00020928.1 | PF04434.12 | SWIM | 528 | 553 | 7.90E-10 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.783 |
| SRR1783600 | control | 4.833 |
| SRR1783602 | moderate drought stress | 5.041 |
| SRR1811619 | moderate drought stress | 5.006 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 7.688 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 7.731 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.712 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.750 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 6.736 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 7.057 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 6.378 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 6.352 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 7.953 |
| SRR2868004 | Drought Stress(Tissue:root) | 8.910 |
| SRR2967015 | Control (Tissue:root) | 9.828 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 13.488 |
| SRR9715740 | Leave | 16.343 |
| SRR9715741 | Leave | 13.370 |
| SRR9715739 | Root | 1.082 |
| SRR9715742 | Root | 5.669 |
| SRR9715743 | Root | 5.388 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.351 |
| SRR8749028 | MeJA induced 9h | 3.722 |
| SRR8749029 | MeJA induced 9h | 1.757 |
| SRR8749030 | Uninduced | 2.981 |
| SRR8749031 | Uninduced | 1.978 |
| SRR8749032 | Uninduced | 1.068 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 10.313 |
| SRR8400027 | Control-Root | 9.421 |