Gene detail

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Gene detail information of Glyur000630s00024934.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G45550.1	7.00E-57	cytochrome P450, family 76, subfamily C, polypeptide 4
NR	XP_003623759.1	3.61E-137	Cytochrome P450 [Medicago truncatula]
COG	NP_241445.1	3.00E-06	cytochrome P450 hydroxylase [Bacillus halodurans C-125]
Swissprot	tr\|Q8VWZ7\|C76B6_CATRO	1.00E-78	Geraniol 8-hydroxylase
trEMBL	tr\|G7L1C4\|G7L1C4_MEDTR	1.00E-137	Cytochrome P450 family protein {ECO:0000313\|EMBL:AES79977.1}

Sequence

Transcript Sequence

>Glyur000630s00024934.1
ATGGAGTACCAAACACTTCTGTCACCAATGTCCTTTGTAAGTGTATGCATTATTCTGATCTTCATTCTTAGAATATTGTTGAACCAAACCCAAAACTCTACCAATCTTCCTCCAGGGCCACACCCATTTCCCATCATTGGAAACATCTTGGAACTTGGCAAAAACCCACACAAGGCACTCACCAAACTCTCCAAAATTTATGGACCCATCATGACACTAAAACTAGGCAGCATAACCAGCATAGTAATCTCCTCTCCAAAACTAGCCAAACAAGTGCTTCACGAGAATGGCCAAATCTTCTCTAATAGGACAGTCCCACATGCAGGTCATGTACTTGACCATCACAAATTCTCAGTGGTGTGGCTACCCCATTCCGATCAGTATTGGAGGAAACTCAAAAAAACTTATGCCACAAAAATATTCTCCCCACAAATGCTTGACTCCACAAAAGACCTTCGCCAACAAAAGTTGCAAGAATTGTTGGATTATGTGAAGGAAAGATGCATGAAAGGTGAGGTTATAGATATTGGTGAGGCTGTATTTACAACAATCCTGAATTCAATTTCAAACACTGTATTCTCTATGGATTTGGCTCACTCTGCGTCTGATGAAAAGTCTCAAGAGTTTAAGAACATTGTTTGGGGTATCATGGAAGAGACTGGGAGGCCTAATGTTGCAGATTTCTTTCCCATTCTTCGTCCACTTGACCCACAAAAGATTTATGCCAGGACGGTAAATTATTTTGAGAGGTTGTTTANGATTTTTGGTGGAATAATTGATGAAAGAATGCAATCCAGAGTTTCAAAAACTGATTTTGAAGCGTGTAATGATGTGTTAGATTCACTTCTTAGTGTTGGAGAAACCAATTCTCAGGTTAGCCGCAAGAAGATGTTACATATATTCCTGCGACACCTCAACATTTTTCCACGTCATCCCTCCCTCTCTCCTCTCTCCTCCCTCGTCCATCCTCATTCTTCCCGACCACCACCAACACAGGAACAGATGATTCCGCCGCCAACTCTGCCTCTCATTCTTCTCCTCATCACAGCAGATCTAGCCGCAATGGGGCTTTTGGCAGAAGACGTAGGCGATGAAGATCGGAACAATCGGGAGGAAGACATGACTCTGGCACGGTAA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00630	38701	40259	-

Gene family

Gene family	subfamily
Cytochrome P450 Family	CYP76C4

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function GO:0005506 iron ion binding GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen GO:0020037 heme binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000630s00024934.1	PF00067.17	p450	37	289	6.50E-35

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.740
SRR1783600	control	0.924
SRR1783602	moderate drought stress	2.876
SRR1811619	moderate drought stress	3.139

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.143
DRR006520	Root Summer glycyrrhizin high producing strain	0.094
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.291
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.451

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	0.000
SRR2868004	Drought Stress(Tissue:root)	0.000
SRR2967015	Control (Tissue:root)	0.032

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	5.926
SRR9715740	Leave	0.310
SRR9715741	Leave	0.974
SRR9715739	Root	0.000
SRR9715742	Root	0.014
SRR9715743	Root	0.054

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	0.275
SRR8400027	Control-Root	0.096