Gene detail information of Glyur000630s00024936.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G45550.1 | 6.00E-60 | cytochrome P450, family 76, subfamily C, polypeptide 4 |
| NR | CBI38803.3 | 2.20E-137 | unnamed protein product [Vitis vinifera] |
| COG | YP_003265754.1 | 5.00E-27 | cytochrome P450 [Haliangium ochraceum DSM 14365] |
| Swissprot | tr|Q8VWZ7|C76B6_CATRO | 3.00E-71 | Geraniol 8-hydroxylase |
| trEMBL | tr|F6I333|F6I333_VITVI | 8.00E-154 | Putative uncharacterized protein {ECO:0000313|EMBL:CCB61350.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00630 | 51922 | 55278 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Cytochrome P450 Family | CYP76C4 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000630s00024936.1 | PF00067.17 | p450 | 2 | 175 | 4.10E-55 |
| Glyur000630s00024936.1 | PF00067.17 | p450 | 199 | 448 | 1.90E-33 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.099 |
| SRR1783600 | control | 1.100 |
| SRR1783602 | moderate drought stress | 2.402 |
| SRR1811619 | moderate drought stress | 2.552 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.102 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.711 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.979 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.122 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.021 |
| SRR2967015 | Control (Tissue:root) | 0.055 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 5.690 |
| SRR9715740 | Leave | 2.406 |
| SRR9715741 | Leave | 1.976 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.196 |
| SRR9715743 | Root | 0.085 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.008 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.021 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.119 |
| SRR8400027 | Control-Root | 0.187 |