Gene detail information of Glyur000631s00022343.2


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G09100.20mRNA capping enzyme family protein
NRXP_003516935.10PREDICTED: mRNA-capping enzyme-like isoform X1 [Glycine max]
trEMBLtr|K7K355|K7K355_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA01G27240.4}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold006314880467896-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K13917RNGTT EC:2.7.7.50 3.6.1.- mRNA surveillance pathway map03015


Gene Ontology

biological_process

GO:0006370  7-methylguanosine mRNA capping

GO:0006397  mRNA processing

GO:0006470  protein dephosphorylation

GO:0016311  dephosphorylation


molecular_function

GO:0004484  mRNA guanylyltransferase activity

GO:0004725  protein tyrosine phosphatase activity

GO:0008138  protein tyrosine/serine/threonine phosphatase activity

GO:0016791  phosphatase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000631s00022343.2PF00782.15DSPc1912492.10E-12
Glyur000631s00022343.2PF01331.14mRNA_cap_enzyme3434632.40E-44
Glyur000631s00022343.2PF03919.10mRNA_cap_C5166123.40E-25


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control16.612
SRR1783600control16.757
SRR1783602moderate drought stress20.977
SRR1811619moderate drought stress20.816

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain34.838
DRR006520Root Summer glycyrrhizin high producing strain34.383
DRR006521Root Winter glycyrrhizin high producing strain47.593
DRR006522Root Winter glycyrrhizin high producing strain46.488
DRR006523Root Summer glycyrrhizin low producing strain32.158
DRR006524Root Summer glycyrrhizin low producing strain32.060
DRR006525Leaf Summer glycyrrhizin high producing strain17.507
DRR006526Leaf Summer glycyrrhizin high producing strain17.330

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)47.458
SRR2868004Drought Stress(Tissue:root)52.919
SRR2967015Control (Tissue:root)51.404

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave23.537
SRR9715740Leave26.347
SRR9715741Leave30.302
SRR9715739Root7.217
SRR9715742Root25.486
SRR9715743Root22.795

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h26.969
SRR8749028MeJA induced 9h46.269
SRR8749029MeJA induced 9h26.164
SRR8749030Uninduced32.621
SRR8749031Uninduced33.823
SRR8749032Uninduced28.088

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root45.917
SRR8400027Control-Root43.844

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved